miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 3' -53.2 NC_002794.1 + 194946 0.71 0.915168
Target:  5'- cGG-CGACGUCGUCagcaGCGGcACgAACgCCGg -3'
miRNA:   3'- -CCaGCUGCAGCAG----UGCCuUG-UUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 193067 0.7 0.926089
Target:  5'- cGG-CuGCGggcCGUCGCGGGACAGCCg- -3'
miRNA:   3'- -CCaGcUGCa--GCAGUGCCUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 189864 0.79 0.506717
Target:  5'- cGUCGGCGUCGUCGCcgccGAcCGGCCCGc -3'
miRNA:   3'- cCAGCUGCAGCAGUGc---CUuGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 188743 0.75 0.732967
Target:  5'- cGGUCGACcaCGaUCAggaacgccacgUGGAACAGCCCGg -3'
miRNA:   3'- -CCAGCUGcaGC-AGU-----------GCCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 188618 0.68 0.964091
Target:  5'- aGGUgugCGAaaaCGUC-UCGCGGAcccgggucuugaGCAGCCCGg -3'
miRNA:   3'- -CCA---GCU---GCAGcAGUGCCU------------UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 187766 0.66 0.992305
Target:  5'- cGcCGGCGcCgGUCGCcucgaccccggaGGAACGGCCCGc -3'
miRNA:   3'- cCaGCUGCaG-CAGUG------------CCUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 187688 0.66 0.993178
Target:  5'- gGGUCGAgcggcccguuggcCGUcucCGUCACGGGccGCAACacgCCGc -3'
miRNA:   3'- -CCAGCU-------------GCA---GCAGUGCCU--UGUUG---GGC- -5'
10824 3' -53.2 NC_002794.1 + 185185 0.71 0.909366
Target:  5'- cGGUCGGCGcggUCGgCGCGGucaucGCGGCUCGc -3'
miRNA:   3'- -CCAGCUGC---AGCaGUGCCu----UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 183209 0.67 0.987295
Target:  5'- cGG-CGGCGcguUCGUCGCcagcGAccagGCGACCCGa -3'
miRNA:   3'- -CCaGCUGC---AGCAGUGc---CU----UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 182917 0.72 0.862616
Target:  5'- aGUCGAUGUCGUCGCucuGGAAguagucCGGCgCCGg -3'
miRNA:   3'- cCAGCUGCAGCAGUG---CCUU------GUUG-GGC- -5'
10824 3' -53.2 NC_002794.1 + 176717 0.68 0.975494
Target:  5'- cGGgacCGACGgCGUCugGaGAuGCGACCUGu -3'
miRNA:   3'- -CCa--GCUGCaGCAGugC-CU-UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 171119 0.66 0.992305
Target:  5'- aGGUCG-CGagGggGCGaGGACGAUCCGg -3'
miRNA:   3'- -CCAGCuGCagCagUGC-CUUGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 158110 0.7 0.931208
Target:  5'- cGGUCG-CGcCGUaGCGGGA-GACCCGg -3'
miRNA:   3'- -CCAGCuGCaGCAgUGCCUUgUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 157049 0.74 0.788653
Target:  5'- aGUcCGGCGagacCGUCGCGGAGCAugGCCCc -3'
miRNA:   3'- cCA-GCUGCa---GCAGUGCCUUGU--UGGGc -5'
10824 3' -53.2 NC_002794.1 + 156303 0.69 0.956813
Target:  5'- cGGUCu-CGUCGUCGCGcggccuaGAGCcACCCc -3'
miRNA:   3'- -CCAGcuGCAGCAGUGC-------CUUGuUGGGc -5'
10824 3' -53.2 NC_002794.1 + 156027 0.66 0.991232
Target:  5'- gGGUCGcagccgucGCGUCG-CGCgacgGGGGCAGCCg- -3'
miRNA:   3'- -CCAGC--------UGCAGCaGUG----CCUUGUUGGgc -5'
10824 3' -53.2 NC_002794.1 + 154689 0.69 0.949413
Target:  5'- cGGUCGucgaucuggGCGUgCaUCACgGGAACGACCCc -3'
miRNA:   3'- -CCAGC---------UGCA-GcAGUG-CCUUGUUGGGc -5'
10824 3' -53.2 NC_002794.1 + 153341 0.68 0.972932
Target:  5'- cGG-CGACGcgugUUGUCA-GGAcGCGGCCCGg -3'
miRNA:   3'- -CCaGCUGC----AGCAGUgCCU-UGUUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 149510 0.71 0.883935
Target:  5'- uGGUgaCGGgGUCGUCGCcgGGAGCgGACCUGg -3'
miRNA:   3'- -CCA--GCUgCAGCAGUG--CCUUG-UUGGGC- -5'
10824 3' -53.2 NC_002794.1 + 149063 0.69 0.960741
Target:  5'- cGUCGACGUCGa-GCGGGugGucaaGCUCGc -3'
miRNA:   3'- cCAGCUGCAGCagUGCCUugU----UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.