Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10824 | 3' | -53.2 | NC_002794.1 | + | 61643 | 1.11 | 0.007322 |
Target: 5'- uGGUCGACGUCGUCACGGAACAACCCGu -3' miRNA: 3'- -CCAGCUGCAGCAGUGCCUUGUUGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 126609 | 0.66 | 0.990044 |
Target: 5'- aGGcCGGCGccgaCGUCGCGGcgugagcGCGACCgGg -3' miRNA: 3'- -CCaGCUGCa---GCAGUGCCu------UGUUGGgC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 53125 | 0.66 | 0.990044 |
Target: 5'- -cUCG-CGUCGacCGCGGcgcuCAGCCCGg -3' miRNA: 3'- ccAGCuGCAGCa-GUGCCuu--GUUGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 67080 | 0.66 | 0.990044 |
Target: 5'- -cUUGAUGUaCGUguCGGGGCcGACCCGu -3' miRNA: 3'- ccAGCUGCA-GCAguGCCUUG-UUGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 136740 | 0.66 | 0.988735 |
Target: 5'- cGGUCGAgGuUCGUCuccccgagcugGCGGAcgcGCGccacGCCCa -3' miRNA: 3'- -CCAGCUgC-AGCAG-----------UGCCU---UGU----UGGGc -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 35662 | 0.66 | 0.990044 |
Target: 5'- cGGUcucCGACGUgGUCAacgaggucaucCGGGAagaguGCCCGg -3' miRNA: 3'- -CCA---GCUGCAgCAGU-----------GCCUUgu---UGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 114387 | 0.66 | 0.988735 |
Target: 5'- aGGccUUGACGUCcuuGUgAUGGAGCAGCgCGu -3' miRNA: 3'- -CC--AGCUGCAG---CAgUGCCUUGUUGgGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 50774 | 0.66 | 0.988597 |
Target: 5'- cGG-CGACGgcgCGUCuCGGGcgGCGccuccucGCCCGg -3' miRNA: 3'- -CCaGCUGCa--GCAGuGCCU--UGU-------UGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 101656 | 0.66 | 0.988735 |
Target: 5'- cGGgCGGCGguuagccCGUCcgaaacgccgGCGGAGCGcgaGCCCGa -3' miRNA: 3'- -CCaGCUGCa------GCAG----------UGCCUUGU---UGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 65294 | 0.66 | 0.991232 |
Target: 5'- -cUCGGCGUCGUCcuCGaGAcgACAGCaCCa -3' miRNA: 3'- ccAGCUGCAGCAGu-GC-CU--UGUUG-GGc -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 14292 | 0.66 | 0.990044 |
Target: 5'- cGUCaGCGUCGaggCGCGGggUAGCUUu -3' miRNA: 3'- cCAGcUGCAGCa--GUGCCuuGUUGGGc -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 117387 | 0.66 | 0.991232 |
Target: 5'- cGGUCG-CGgCGaaGCGGGccuccaccgucGCGACCCGc -3' miRNA: 3'- -CCAGCuGCaGCagUGCCU-----------UGUUGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 116058 | 0.66 | 0.99327 |
Target: 5'- gGGgagcgCGACuGggGUCGCGGAGC-GCUCGg -3' miRNA: 3'- -CCa----GCUG-CagCAGUGCCUUGuUGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 91196 | 0.66 | 0.99327 |
Target: 5'- cGG-CGACGcUGuUCGCGGAcgGCGACgCGa -3' miRNA: 3'- -CCaGCUGCaGC-AGUGCCU--UGUUGgGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 187688 | 0.66 | 0.993178 |
Target: 5'- gGGUCGAgcggcccguuggcCGUcucCGUCACGGGccGCAACacgCCGc -3' miRNA: 3'- -CCAGCU-------------GCA---GCAGUGCCU--UGUUG---GGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 171119 | 0.66 | 0.992305 |
Target: 5'- aGGUCG-CGagGggGCGaGGACGAUCCGg -3' miRNA: 3'- -CCAGCuGCagCagUGC-CUUGUUGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 187766 | 0.66 | 0.992305 |
Target: 5'- cGcCGGCGcCgGUCGCcucgaccccggaGGAACGGCCCGc -3' miRNA: 3'- cCaGCUGCaG-CAGUG------------CCUUGUUGGGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 156027 | 0.66 | 0.991232 |
Target: 5'- gGGUCGcagccgucGCGUCG-CGCgacgGGGGCAGCCg- -3' miRNA: 3'- -CCAGC--------UGCAGCaGUG----CCUUGUUGGgc -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 53594 | 0.66 | 0.992305 |
Target: 5'- uGUCGGCGUCGgcgUCAcCGGGccgccGCAGCgUCGg -3' miRNA: 3'- cCAGCUGCAGC---AGU-GCCU-----UGUUG-GGC- -5' |
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10824 | 3' | -53.2 | NC_002794.1 | + | 44541 | 0.66 | 0.991232 |
Target: 5'- cGcCGuCGUCGUCGcCGGcGGCGgcGCCCGu -3' miRNA: 3'- cCaGCuGCAGCAGU-GCC-UUGU--UGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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