miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 5' -52.5 NC_002794.1 + 82488 0.66 0.991134
Target:  5'- cGCGACGcGGCccgCCgCGACGcGCGAGa- -3'
miRNA:   3'- aCGCUGCaCCGa--GG-GCUGU-UGUUUag -5'
10824 5' -52.5 NC_002794.1 + 59448 0.66 0.991134
Target:  5'- cGcCGcCG-GGCUCuCCGACGACAu--- -3'
miRNA:   3'- aC-GCuGCaCCGAG-GGCUGUUGUuuag -5'
10824 5' -52.5 NC_002794.1 + 182946 0.66 0.991134
Target:  5'- gGCGcCG-GGCUCgagCCGACGGCGGc-- -3'
miRNA:   3'- aCGCuGCaCCGAG---GGCUGUUGUUuag -5'
10824 5' -52.5 NC_002794.1 + 115930 0.66 0.989893
Target:  5'- cGCGGCGgcgGGCcggCCCG-CcGCGuGUCg -3'
miRNA:   3'- aCGCUGCa--CCGa--GGGCuGuUGUuUAG- -5'
10824 5' -52.5 NC_002794.1 + 137874 0.66 0.989893
Target:  5'- gUGCGGCGUcuggugGGCgaugCCCGcCAggacgguacACAGGUCc -3'
miRNA:   3'- -ACGCUGCA------CCGa---GGGCuGU---------UGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 63921 0.66 0.989893
Target:  5'- cGCGACc--GCcgCCCGGcCGGCGAGUCu -3'
miRNA:   3'- aCGCUGcacCGa-GGGCU-GUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 138710 0.66 0.989893
Target:  5'- gGCGGCGUGGaCUCgcgucgagCCGGCucGACGGGg- -3'
miRNA:   3'- aCGCUGCACC-GAG--------GGCUG--UUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 59205 0.66 0.989893
Target:  5'- cGCGcACGUcGGCgUCUCGGCcGCGGcgCg -3'
miRNA:   3'- aCGC-UGCA-CCG-AGGGCUGuUGUUuaG- -5'
10824 5' -52.5 NC_002794.1 + 123005 0.66 0.989762
Target:  5'- gUGCuGACGggccGGCUggccgucguguucCCCGACAAC--GUCg -3'
miRNA:   3'- -ACG-CUGCa---CCGA-------------GGGCUGUUGuuUAG- -5'
10824 5' -52.5 NC_002794.1 + 67714 0.66 0.989495
Target:  5'- aGCGGCaacaggGGCucggUCCCGGCGGCGgccacccgagcccgGAUCa -3'
miRNA:   3'- aCGCUGca----CCG----AGGGCUGUUGU--------------UUAG- -5'
10824 5' -52.5 NC_002794.1 + 101422 0.66 0.98852
Target:  5'- -uCGACGUGGCUgCgCGACGAUc---- -3'
miRNA:   3'- acGCUGCACCGAgG-GCUGUUGuuuag -5'
10824 5' -52.5 NC_002794.1 + 64023 0.66 0.98852
Target:  5'- gGCGAUGUcgGaGCUCCagugGACGGCGAAa- -3'
miRNA:   3'- aCGCUGCA--C-CGAGGg---CUGUUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 104468 0.66 0.987007
Target:  5'- gGCGGCGUgugcaggaugcgGGCggCCaCGGCGGcCGGGUCg -3'
miRNA:   3'- aCGCUGCA------------CCGa-GG-GCUGUU-GUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 58073 0.66 0.987007
Target:  5'- gGCGGCGggacgGGCggCCCGGCGcccGCGc--- -3'
miRNA:   3'- aCGCUGCa----CCGa-GGGCUGU---UGUuuag -5'
10824 5' -52.5 NC_002794.1 + 107059 0.66 0.985345
Target:  5'- gGCGGCG-GGCgcggCgCCGcCGGCAuGUCg -3'
miRNA:   3'- aCGCUGCaCCGa---G-GGCuGUUGUuUAG- -5'
10824 5' -52.5 NC_002794.1 + 102387 0.66 0.985345
Target:  5'- cGCGACGUGGUggaacuggucUUCCG-CGACGc--- -3'
miRNA:   3'- aCGCUGCACCG----------AGGGCuGUUGUuuag -5'
10824 5' -52.5 NC_002794.1 + 30361 0.67 0.983525
Target:  5'- aGCGACaggcccUGGCUCuuGGCGAUc-GUCa -3'
miRNA:   3'- aCGCUGc-----ACCGAGggCUGUUGuuUAG- -5'
10824 5' -52.5 NC_002794.1 + 47756 0.67 0.983525
Target:  5'- gGCGGcCGUGG-UCgCGGCAcaacgcGCAGGUCg -3'
miRNA:   3'- aCGCU-GCACCgAGgGCUGU------UGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 129048 0.67 0.983525
Target:  5'- cUGCGGuCGUGGCgCgCGACggUguGUCg -3'
miRNA:   3'- -ACGCU-GCACCGaGgGCUGuuGuuUAG- -5'
10824 5' -52.5 NC_002794.1 + 67431 0.67 0.982947
Target:  5'- gGCGGCGUgucgcgccgcuucgGGCUCCCGcCcGCAc--- -3'
miRNA:   3'- aCGCUGCA--------------CCGAGGGCuGuUGUuuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.