miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 5' -52.5 NC_002794.1 + 61680 1.11 0.005858
Target:  5'- gUGCGACGUGGCUCCCGACAACAAAUCg -3'
miRNA:   3'- -ACGCUGCACCGAGGGCUGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 103812 0.77 0.603688
Target:  5'- cUGCGACGgcGGCg-CCGACGugGAGUCg -3'
miRNA:   3'- -ACGCUGCa-CCGagGGCUGUugUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 87005 0.76 0.645021
Target:  5'- gGCGGCGUGGgUUCCGGCGA-GGGUCc -3'
miRNA:   3'- aCGCUGCACCgAGGGCUGUUgUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 87333 0.76 0.655349
Target:  5'- aGCGGCGgcaGGUUCCCcaGCAGCGGGUCc -3'
miRNA:   3'- aCGCUGCa--CCGAGGGc-UGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 145589 0.76 0.665658
Target:  5'- aGCGGCGgccGGCUCCCGcggagucgggcGCGACGAGg- -3'
miRNA:   3'- aCGCUGCa--CCGAGGGC-----------UGUUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 13414 0.75 0.690269
Target:  5'- cUGCucugGACGcucuggguccucuccUGGCUCCCGACGACGAcUCc -3'
miRNA:   3'- -ACG----CUGC---------------ACCGAGGGCUGUUGUUuAG- -5'
10824 5' -52.5 NC_002794.1 + 11644 0.72 0.829115
Target:  5'- aGCGACG-GGCggCCGACGACGc--- -3'
miRNA:   3'- aCGCUGCaCCGagGGCUGUUGUuuag -5'
10824 5' -52.5 NC_002794.1 + 67023 0.71 0.869106
Target:  5'- gGCGGCGgccGGCUCCCGccGCGucGCGGAc- -3'
miRNA:   3'- aCGCUGCa--CCGAGGGC--UGU--UGUUUag -5'
10824 5' -52.5 NC_002794.1 + 116933 0.71 0.869106
Target:  5'- gGCGuCGUcGGCgucCCCGGCGGCGGcGUCg -3'
miRNA:   3'- aCGCuGCA-CCGa--GGGCUGUUGUU-UAG- -5'
10824 5' -52.5 NC_002794.1 + 92972 0.71 0.883627
Target:  5'- cGCGGCGgcaaggGGCUgCCCGuCAGCGuguUCu -3'
miRNA:   3'- aCGCUGCa-----CCGA-GGGCuGUUGUuu-AG- -5'
10824 5' -52.5 NC_002794.1 + 49607 0.71 0.890549
Target:  5'- gGCGACGgcgGGCg-CCGGCGGCGccUCg -3'
miRNA:   3'- aCGCUGCa--CCGagGGCUGUUGUuuAG- -5'
10824 5' -52.5 NC_002794.1 + 55313 0.71 0.897238
Target:  5'- cGCGGCGggcgcgggcGGCUUCCGAgGACccgGGGUCg -3'
miRNA:   3'- aCGCUGCa--------CCGAGGGCUgUUG---UUUAG- -5'
10824 5' -52.5 NC_002794.1 + 190460 0.7 0.903693
Target:  5'- cGCGGCGUcGCgCCCGACGcccACGGGUg -3'
miRNA:   3'- aCGCUGCAcCGaGGGCUGU---UGUUUAg -5'
10824 5' -52.5 NC_002794.1 + 179999 0.7 0.909908
Target:  5'- cGCGACGgcgGGCccggCCaCGACGACGGc-- -3'
miRNA:   3'- aCGCUGCa--CCGa---GG-GCUGUUGUUuag -5'
10824 5' -52.5 NC_002794.1 + 37899 0.7 0.915883
Target:  5'- gGCGGCGgcagcGGCUCgCCGGCcuCAAcGUCa -3'
miRNA:   3'- aCGCUGCa----CCGAG-GGCUGuuGUU-UAG- -5'
10824 5' -52.5 NC_002794.1 + 128156 0.7 0.921614
Target:  5'- cGCGACGgcGGCUCgCGccGCgGACGGGUCg -3'
miRNA:   3'- aCGCUGCa-CCGAGgGC--UG-UUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 70872 0.69 0.932346
Target:  5'- gGCGGCGgcagcggcGGCUCCuCGAgCGcCAGGUCg -3'
miRNA:   3'- aCGCUGCa-------CCGAGG-GCU-GUuGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 179223 0.69 0.932346
Target:  5'- --gGACGUGGC-CCagauGCAACAGGUCg -3'
miRNA:   3'- acgCUGCACCGaGGgc--UGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 95865 0.69 0.932346
Target:  5'- gGCGGgccguuucagUGUGGCgaCCCGGCGGCGAGg- -3'
miRNA:   3'- aCGCU----------GCACCGa-GGGCUGUUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 14682 0.69 0.937346
Target:  5'- gGCGGCGgucgcgcuGCUCCUGACGGCGu--- -3'
miRNA:   3'- aCGCUGCac------CGAGGGCUGUUGUuuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.