Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10824 | 5' | -52.5 | NC_002794.1 | + | 14682 | 0.69 | 0.937346 |
Target: 5'- gGCGGCGgucgcgcuGCUCCUGACGGCGu--- -3' miRNA: 3'- aCGCUGCac------CGAGGGCUGUUGUuuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 62821 | 0.69 | 0.942104 |
Target: 5'- gGCGcCGUacuuucgcccGGUcCCCGACAACGAGUa -3' miRNA: 3'- aCGCuGCA----------CCGaGGGCUGUUGUUUAg -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 140526 | 0.69 | 0.942104 |
Target: 5'- gGCGGCa-GGC-CCUcgGGCAACAAAUCg -3' miRNA: 3'- aCGCUGcaCCGaGGG--CUGUUGUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 141457 | 0.69 | 0.94662 |
Target: 5'- aGCGGCGcGGCgUCCgGACuGGCGAgcAUCg -3' miRNA: 3'- aCGCUGCaCCG-AGGgCUG-UUGUU--UAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 53855 | 0.69 | 0.94662 |
Target: 5'- -uCGGCGgGGUUCUCGACGACGGucUCg -3' miRNA: 3'- acGCUGCaCCGAGGGCUGUUGUUu-AG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 65930 | 0.69 | 0.94662 |
Target: 5'- gGCGGCgGUGGCg-UCGGCGGCGGuAUCg -3' miRNA: 3'- aCGCUG-CACCGagGGCUGUUGUU-UAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 79954 | 0.68 | 0.953352 |
Target: 5'- cUGCGAgcuCGUGGCguacgacccccggCUCGGCGACGAGg- -3' miRNA: 3'- -ACGCU---GCACCGa------------GGGCUGUUGUUUag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 94416 | 0.68 | 0.954941 |
Target: 5'- gGUGugG-GGCgcgCCCGACAACc---- -3' miRNA: 3'- aCGCugCaCCGa--GGGCUGUUGuuuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 135450 | 0.68 | 0.958381 |
Target: 5'- -cCGACG-GGCUCCCggggcccgcggccGACGACGAcgCc -3' miRNA: 3'- acGCUGCaCCGAGGG-------------CUGUUGUUuaG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 128777 | 0.68 | 0.958752 |
Target: 5'- gGCcGgGUGGaCUCCCGAgAGCAugAAUCc -3' miRNA: 3'- aCGcUgCACC-GAGGGCUgUUGU--UUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 107758 | 0.68 | 0.962336 |
Target: 5'- cGCGcCGcUGGCUggagcgcgcucgCCCGGCGACGAccgcGUCc -3' miRNA: 3'- aCGCuGC-ACCGA------------GGGCUGUUGUU----UAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 141645 | 0.68 | 0.962336 |
Target: 5'- gGcCGGCGUGGCcgcggCCGcCGGCGGGUCg -3' miRNA: 3'- aC-GCUGCACCGag---GGCuGUUGUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 98080 | 0.68 | 0.962336 |
Target: 5'- gGCGGCGcuguccgcuuUGGCggguaUCCCcggugccaacggGACGACGAAUCa -3' miRNA: 3'- aCGCUGC----------ACCG-----AGGG------------CUGUUGUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 99928 | 0.68 | 0.962336 |
Target: 5'- gUGCGGCGUGGUcuugcggcuguUCggccggaccgCCGACGGCGccAGUCu -3' miRNA: 3'- -ACGCUGCACCG-----------AG----------GGCUGUUGU--UUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 13806 | 0.68 | 0.965697 |
Target: 5'- cGCGACG-GGCccggCCGGCGGCGAc-- -3' miRNA: 3'- aCGCUGCaCCGag--GGCUGUUGUUuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 146308 | 0.68 | 0.965697 |
Target: 5'- gUGuUGACG-GGCUCgCCGACGcgcgGCGGAUUc -3' miRNA: 3'- -AC-GCUGCaCCGAG-GGCUGU----UGUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 175726 | 0.68 | 0.965697 |
Target: 5'- gGCGaggaGCGUGGC-CgUGAgAGCGAGUCu -3' miRNA: 3'- aCGC----UGCACCGaGgGCUgUUGUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 194901 | 0.68 | 0.968841 |
Target: 5'- cGCGAagcuCGU-GCUCgCCGACAGCAGc-- -3' miRNA: 3'- aCGCU----GCAcCGAG-GGCUGUUGUUuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 78414 | 0.67 | 0.974504 |
Target: 5'- cGCGACucuccGCUCCCGGCGuCAcGGUCg -3' miRNA: 3'- aCGCUGcac--CGAGGGCUGUuGU-UUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 42600 | 0.67 | 0.975541 |
Target: 5'- cGCGGCGgccgggagcgGGCUCUcuCGACGACcgcgcucucacagcgGAGUCg -3' miRNA: 3'- aCGCUGCa---------CCGAGG--GCUGUUG---------------UUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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