miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 5' -52.5 NC_002794.1 + 96909 0.67 0.981539
Target:  5'- gGCGGagGUGGCggaggCgCCGGCGACAGcacgccGUCg -3'
miRNA:   3'- aCGCUg-CACCGa----G-GGCUGUUGUU------UAG- -5'
10824 5' -52.5 NC_002794.1 + 143100 0.67 0.981539
Target:  5'- cGCGGCGUGuuccagccccGCUCggCCGugGcGCAGGUCu -3'
miRNA:   3'- aCGCUGCAC----------CGAG--GGCugU-UGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 83881 0.67 0.979379
Target:  5'- cGCGACGgccccgGGCUcggcgCCCGACGAg----- -3'
miRNA:   3'- aCGCUGCa-----CCGA-----GGGCUGUUguuuag -5'
10824 5' -52.5 NC_002794.1 + 100372 0.67 0.977037
Target:  5'- cUGCGAgGUGGCcgacgUCCgCGGCGugGAc-- -3'
miRNA:   3'- -ACGCUgCACCG-----AGG-GCUGUugUUuag -5'
10824 5' -52.5 NC_002794.1 + 179702 0.67 0.977037
Target:  5'- gGCGACgGUGGCgacgCCGGCGGCu---- -3'
miRNA:   3'- aCGCUG-CACCGag--GGCUGUUGuuuag -5'
10824 5' -52.5 NC_002794.1 + 62072 0.67 0.977037
Target:  5'- gGCGACGccGGCggcgaCGACGGCGAcgCg -3'
miRNA:   3'- aCGCUGCa-CCGagg--GCUGUUGUUuaG- -5'
10824 5' -52.5 NC_002794.1 + 37330 0.67 0.977037
Target:  5'- aGCGGUGgGGC-CCgggCGGCAGCAGGUCg -3'
miRNA:   3'- aCGCUGCaCCGaGG---GCUGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 42600 0.67 0.975541
Target:  5'- cGCGGCGgccgggagcgGGCUCUcuCGACGACcgcgcucucacagcgGAGUCg -3'
miRNA:   3'- aCGCUGCa---------CCGAGG--GCUGUUG---------------UUUAG- -5'
10824 5' -52.5 NC_002794.1 + 78414 0.67 0.974504
Target:  5'- cGCGACucuccGCUCCCGGCGuCAcGGUCg -3'
miRNA:   3'- aCGCUGcac--CGAGGGCUGUuGU-UUAG- -5'
10824 5' -52.5 NC_002794.1 + 194901 0.68 0.968841
Target:  5'- cGCGAagcuCGU-GCUCgCCGACAGCAGc-- -3'
miRNA:   3'- aCGCU----GCAcCGAG-GGCUGUUGUUuag -5'
10824 5' -52.5 NC_002794.1 + 175726 0.68 0.965697
Target:  5'- gGCGaggaGCGUGGC-CgUGAgAGCGAGUCu -3'
miRNA:   3'- aCGC----UGCACCGaGgGCUgUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 146308 0.68 0.965697
Target:  5'- gUGuUGACG-GGCUCgCCGACGcgcgGCGGAUUc -3'
miRNA:   3'- -AC-GCUGCaCCGAG-GGCUGU----UGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 13806 0.68 0.965697
Target:  5'- cGCGACG-GGCccggCCGGCGGCGAc-- -3'
miRNA:   3'- aCGCUGCaCCGag--GGCUGUUGUUuag -5'
10824 5' -52.5 NC_002794.1 + 107758 0.68 0.962336
Target:  5'- cGCGcCGcUGGCUggagcgcgcucgCCCGGCGACGAccgcGUCc -3'
miRNA:   3'- aCGCuGC-ACCGA------------GGGCUGUUGUU----UAG- -5'
10824 5' -52.5 NC_002794.1 + 98080 0.68 0.962336
Target:  5'- gGCGGCGcuguccgcuuUGGCggguaUCCCcggugccaacggGACGACGAAUCa -3'
miRNA:   3'- aCGCUGC----------ACCG-----AGGG------------CUGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 99928 0.68 0.962336
Target:  5'- gUGCGGCGUGGUcuugcggcuguUCggccggaccgCCGACGGCGccAGUCu -3'
miRNA:   3'- -ACGCUGCACCG-----------AG----------GGCUGUUGU--UUAG- -5'
10824 5' -52.5 NC_002794.1 + 141645 0.68 0.962336
Target:  5'- gGcCGGCGUGGCcgcggCCGcCGGCGGGUCg -3'
miRNA:   3'- aC-GCUGCACCGag---GGCuGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 128777 0.68 0.958752
Target:  5'- gGCcGgGUGGaCUCCCGAgAGCAugAAUCc -3'
miRNA:   3'- aCGcUgCACC-GAGGGCUgUUGU--UUAG- -5'
10824 5' -52.5 NC_002794.1 + 135450 0.68 0.958381
Target:  5'- -cCGACG-GGCUCCCggggcccgcggccGACGACGAcgCc -3'
miRNA:   3'- acGCUGCaCCGAGGG-------------CUGUUGUUuaG- -5'
10824 5' -52.5 NC_002794.1 + 94416 0.68 0.954941
Target:  5'- gGUGugG-GGCgcgCCCGACAACc---- -3'
miRNA:   3'- aCGCugCaCCGa--GGGCUGUUGuuuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.