miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 5' -52.5 NC_002794.1 + 11644 0.72 0.829115
Target:  5'- aGCGACG-GGCggCCGACGACGc--- -3'
miRNA:   3'- aCGCUGCaCCGagGGCUGUUGUuuag -5'
10824 5' -52.5 NC_002794.1 + 12220 0.69 0.937346
Target:  5'- gGCGGCGUcGGCggCgCCGGCGGCGccGUCc -3'
miRNA:   3'- aCGCUGCA-CCGa-G-GGCUGUUGUu-UAG- -5'
10824 5' -52.5 NC_002794.1 + 13414 0.75 0.690269
Target:  5'- cUGCucugGACGcucuggguccucuccUGGCUCCCGACGACGAcUCc -3'
miRNA:   3'- -ACG----CUGC---------------ACCGAGGGCUGUUGUUuAG- -5'
10824 5' -52.5 NC_002794.1 + 13806 0.68 0.965697
Target:  5'- cGCGACG-GGCccggCCGGCGGCGAc-- -3'
miRNA:   3'- aCGCUGCaCCGag--GGCUGUUGUUuag -5'
10824 5' -52.5 NC_002794.1 + 14682 0.69 0.937346
Target:  5'- gGCGGCGgucgcgcuGCUCCUGACGGCGu--- -3'
miRNA:   3'- aCGCUGCac------CGAGGGCUGUUGUuuag -5'
10824 5' -52.5 NC_002794.1 + 30361 0.67 0.983525
Target:  5'- aGCGACaggcccUGGCUCuuGGCGAUc-GUCa -3'
miRNA:   3'- aCGCUGc-----ACCGAGggCUGUUGuuUAG- -5'
10824 5' -52.5 NC_002794.1 + 37330 0.67 0.977037
Target:  5'- aGCGGUGgGGC-CCgggCGGCAGCAGGUCg -3'
miRNA:   3'- aCGCUGCaCCGaGG---GCUGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 37899 0.7 0.915883
Target:  5'- gGCGGCGgcagcGGCUCgCCGGCcuCAAcGUCa -3'
miRNA:   3'- aCGCUGCa----CCGAG-GGCUGuuGUU-UAG- -5'
10824 5' -52.5 NC_002794.1 + 42600 0.67 0.975541
Target:  5'- cGCGGCGgccgggagcgGGCUCUcuCGACGACcgcgcucucacagcgGAGUCg -3'
miRNA:   3'- aCGCUGCa---------CCGAGG--GCUGUUG---------------UUUAG- -5'
10824 5' -52.5 NC_002794.1 + 47756 0.67 0.983525
Target:  5'- gGCGGcCGUGG-UCgCGGCAcaacgcGCAGGUCg -3'
miRNA:   3'- aCGCU-GCACCgAGgGCUGU------UGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 49607 0.71 0.890549
Target:  5'- gGCGACGgcgGGCg-CCGGCGGCGccUCg -3'
miRNA:   3'- aCGCUGCa--CCGagGGCUGUUGUuuAG- -5'
10824 5' -52.5 NC_002794.1 + 53855 0.69 0.94662
Target:  5'- -uCGGCGgGGUUCUCGACGACGGucUCg -3'
miRNA:   3'- acGCUGCaCCGAGGGCUGUUGUUu-AG- -5'
10824 5' -52.5 NC_002794.1 + 55313 0.71 0.897238
Target:  5'- cGCGGCGggcgcgggcGGCUUCCGAgGACccgGGGUCg -3'
miRNA:   3'- aCGCUGCa--------CCGAGGGCUgUUG---UUUAG- -5'
10824 5' -52.5 NC_002794.1 + 58073 0.66 0.987007
Target:  5'- gGCGGCGggacgGGCggCCCGGCGcccGCGc--- -3'
miRNA:   3'- aCGCUGCa----CCGa-GGGCUGU---UGUuuag -5'
10824 5' -52.5 NC_002794.1 + 59205 0.66 0.989893
Target:  5'- cGCGcACGUcGGCgUCUCGGCcGCGGcgCg -3'
miRNA:   3'- aCGC-UGCA-CCG-AGGGCUGuUGUUuaG- -5'
10824 5' -52.5 NC_002794.1 + 59448 0.66 0.991134
Target:  5'- cGcCGcCG-GGCUCuCCGACGACAu--- -3'
miRNA:   3'- aC-GCuGCaCCGAG-GGCUGUUGUuuag -5'
10824 5' -52.5 NC_002794.1 + 61680 1.11 0.005858
Target:  5'- gUGCGACGUGGCUCCCGACAACAAAUCg -3'
miRNA:   3'- -ACGCUGCACCGAGGGCUGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 62072 0.67 0.977037
Target:  5'- gGCGACGccGGCggcgaCGACGGCGAcgCg -3'
miRNA:   3'- aCGCUGCa-CCGagg--GCUGUUGUUuaG- -5'
10824 5' -52.5 NC_002794.1 + 62821 0.69 0.942104
Target:  5'- gGCGcCGUacuuucgcccGGUcCCCGACAACGAGUa -3'
miRNA:   3'- aCGCuGCA----------CCGaGGGCUGUUGUUUAg -5'
10824 5' -52.5 NC_002794.1 + 63921 0.66 0.989893
Target:  5'- cGCGACc--GCcgCCCGGcCGGCGAGUCu -3'
miRNA:   3'- aCGCUGcacCGa-GGGCU-GUUGUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.