miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 5' -52.5 NC_002794.1 + 64023 0.66 0.98852
Target:  5'- gGCGAUGUcgGaGCUCCagugGACGGCGAAa- -3'
miRNA:   3'- aCGCUGCA--C-CGAGGg---CUGUUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 65930 0.69 0.94662
Target:  5'- gGCGGCgGUGGCg-UCGGCGGCGGuAUCg -3'
miRNA:   3'- aCGCUG-CACCGagGGCUGUUGUU-UAG- -5'
10824 5' -52.5 NC_002794.1 + 67023 0.71 0.869106
Target:  5'- gGCGGCGgccGGCUCCCGccGCGucGCGGAc- -3'
miRNA:   3'- aCGCUGCa--CCGAGGGC--UGU--UGUUUag -5'
10824 5' -52.5 NC_002794.1 + 67431 0.67 0.982947
Target:  5'- gGCGGCGUgucgcgccgcuucgGGCUCCCGcCcGCAc--- -3'
miRNA:   3'- aCGCUGCA--------------CCGAGGGCuGuUGUuuag -5'
10824 5' -52.5 NC_002794.1 + 67714 0.66 0.989495
Target:  5'- aGCGGCaacaggGGCucggUCCCGGCGGCGgccacccgagcccgGAUCa -3'
miRNA:   3'- aCGCUGca----CCG----AGGGCUGUUGU--------------UUAG- -5'
10824 5' -52.5 NC_002794.1 + 70872 0.69 0.932346
Target:  5'- gGCGGCGgcagcggcGGCUCCuCGAgCGcCAGGUCg -3'
miRNA:   3'- aCGCUGCa-------CCGAGG-GCU-GUuGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 78414 0.67 0.974504
Target:  5'- cGCGACucuccGCUCCCGGCGuCAcGGUCg -3'
miRNA:   3'- aCGCUGcac--CGAGGGCUGUuGU-UUAG- -5'
10824 5' -52.5 NC_002794.1 + 79954 0.68 0.953352
Target:  5'- cUGCGAgcuCGUGGCguacgacccccggCUCGGCGACGAGg- -3'
miRNA:   3'- -ACGCU---GCACCGa------------GGGCUGUUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 82488 0.66 0.991134
Target:  5'- cGCGACGcGGCccgCCgCGACGcGCGAGa- -3'
miRNA:   3'- aCGCUGCaCCGa--GG-GCUGU-UGUUUag -5'
10824 5' -52.5 NC_002794.1 + 83881 0.67 0.979379
Target:  5'- cGCGACGgccccgGGCUcggcgCCCGACGAg----- -3'
miRNA:   3'- aCGCUGCa-----CCGA-----GGGCUGUUguuuag -5'
10824 5' -52.5 NC_002794.1 + 87005 0.76 0.645021
Target:  5'- gGCGGCGUGGgUUCCGGCGA-GGGUCc -3'
miRNA:   3'- aCGCUGCACCgAGGGCUGUUgUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 87333 0.76 0.655349
Target:  5'- aGCGGCGgcaGGUUCCCcaGCAGCGGGUCc -3'
miRNA:   3'- aCGCUGCa--CCGAGGGc-UGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 92972 0.71 0.883627
Target:  5'- cGCGGCGgcaaggGGCUgCCCGuCAGCGuguUCu -3'
miRNA:   3'- aCGCUGCa-----CCGA-GGGCuGUUGUuu-AG- -5'
10824 5' -52.5 NC_002794.1 + 94416 0.68 0.954941
Target:  5'- gGUGugG-GGCgcgCCCGACAACc---- -3'
miRNA:   3'- aCGCugCaCCGa--GGGCUGUUGuuuag -5'
10824 5' -52.5 NC_002794.1 + 95865 0.69 0.932346
Target:  5'- gGCGGgccguuucagUGUGGCgaCCCGGCGGCGAGg- -3'
miRNA:   3'- aCGCU----------GCACCGa-GGGCUGUUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 96909 0.67 0.981539
Target:  5'- gGCGGagGUGGCggaggCgCCGGCGACAGcacgccGUCg -3'
miRNA:   3'- aCGCUg-CACCGa----G-GGCUGUUGUU------UAG- -5'
10824 5' -52.5 NC_002794.1 + 98080 0.68 0.962336
Target:  5'- gGCGGCGcuguccgcuuUGGCggguaUCCCcggugccaacggGACGACGAAUCa -3'
miRNA:   3'- aCGCUGC----------ACCG-----AGGG------------CUGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 99928 0.68 0.962336
Target:  5'- gUGCGGCGUGGUcuugcggcuguUCggccggaccgCCGACGGCGccAGUCu -3'
miRNA:   3'- -ACGCUGCACCG-----------AG----------GGCUGUUGU--UUAG- -5'
10824 5' -52.5 NC_002794.1 + 100372 0.67 0.977037
Target:  5'- cUGCGAgGUGGCcgacgUCCgCGGCGugGAc-- -3'
miRNA:   3'- -ACGCUgCACCG-----AGG-GCUGUugUUuag -5'
10824 5' -52.5 NC_002794.1 + 101422 0.66 0.98852
Target:  5'- -uCGACGUGGCUgCgCGACGAUc---- -3'
miRNA:   3'- acGCUGCACCGAgG-GCUGUUGuuuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.