miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10824 5' -52.5 NC_002794.1 + 194901 0.68 0.968841
Target:  5'- cGCGAagcuCGU-GCUCgCCGACAGCAGc-- -3'
miRNA:   3'- aCGCU----GCAcCGAG-GGCUGUUGUUuag -5'
10824 5' -52.5 NC_002794.1 + 190460 0.7 0.903693
Target:  5'- cGCGGCGUcGCgCCCGACGcccACGGGUg -3'
miRNA:   3'- aCGCUGCAcCGaGGGCUGU---UGUUUAg -5'
10824 5' -52.5 NC_002794.1 + 182946 0.66 0.991134
Target:  5'- gGCGcCG-GGCUCgagCCGACGGCGGc-- -3'
miRNA:   3'- aCGCuGCaCCGAG---GGCUGUUGUUuag -5'
10824 5' -52.5 NC_002794.1 + 179999 0.7 0.909908
Target:  5'- cGCGACGgcgGGCccggCCaCGACGACGGc-- -3'
miRNA:   3'- aCGCUGCa--CCGa---GG-GCUGUUGUUuag -5'
10824 5' -52.5 NC_002794.1 + 179702 0.67 0.977037
Target:  5'- gGCGACgGUGGCgacgCCGGCGGCu---- -3'
miRNA:   3'- aCGCUG-CACCGag--GGCUGUUGuuuag -5'
10824 5' -52.5 NC_002794.1 + 179223 0.69 0.932346
Target:  5'- --gGACGUGGC-CCagauGCAACAGGUCg -3'
miRNA:   3'- acgCUGCACCGaGGgc--UGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 175726 0.68 0.965697
Target:  5'- gGCGaggaGCGUGGC-CgUGAgAGCGAGUCu -3'
miRNA:   3'- aCGC----UGCACCGaGgGCUgUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 146308 0.68 0.965697
Target:  5'- gUGuUGACG-GGCUCgCCGACGcgcgGCGGAUUc -3'
miRNA:   3'- -AC-GCUGCaCCGAG-GGCUGU----UGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 145589 0.76 0.665658
Target:  5'- aGCGGCGgccGGCUCCCGcggagucgggcGCGACGAGg- -3'
miRNA:   3'- aCGCUGCa--CCGAGGGC-----------UGUUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 143100 0.67 0.981539
Target:  5'- cGCGGCGUGuuccagccccGCUCggCCGugGcGCAGGUCu -3'
miRNA:   3'- aCGCUGCAC----------CGAG--GGCugU-UGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 141645 0.68 0.962336
Target:  5'- gGcCGGCGUGGCcgcggCCGcCGGCGGGUCg -3'
miRNA:   3'- aC-GCUGCACCGag---GGCuGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 141457 0.69 0.94662
Target:  5'- aGCGGCGcGGCgUCCgGACuGGCGAgcAUCg -3'
miRNA:   3'- aCGCUGCaCCG-AGGgCUG-UUGUU--UAG- -5'
10824 5' -52.5 NC_002794.1 + 140526 0.69 0.942104
Target:  5'- gGCGGCa-GGC-CCUcgGGCAACAAAUCg -3'
miRNA:   3'- aCGCUGcaCCGaGGG--CUGUUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 138710 0.66 0.989893
Target:  5'- gGCGGCGUGGaCUCgcgucgagCCGGCucGACGGGg- -3'
miRNA:   3'- aCGCUGCACC-GAG--------GGCUG--UUGUUUag -5'
10824 5' -52.5 NC_002794.1 + 137874 0.66 0.989893
Target:  5'- gUGCGGCGUcuggugGGCgaugCCCGcCAggacgguacACAGGUCc -3'
miRNA:   3'- -ACGCUGCA------CCGa---GGGCuGU---------UGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 135450 0.68 0.958381
Target:  5'- -cCGACG-GGCUCCCggggcccgcggccGACGACGAcgCc -3'
miRNA:   3'- acGCUGCaCCGAGGG-------------CUGUUGUUuaG- -5'
10824 5' -52.5 NC_002794.1 + 129048 0.67 0.983525
Target:  5'- cUGCGGuCGUGGCgCgCGACggUguGUCg -3'
miRNA:   3'- -ACGCU-GCACCGaGgGCUGuuGuuUAG- -5'
10824 5' -52.5 NC_002794.1 + 128777 0.68 0.958752
Target:  5'- gGCcGgGUGGaCUCCCGAgAGCAugAAUCc -3'
miRNA:   3'- aCGcUgCACC-GAGGGCUgUUGU--UUAG- -5'
10824 5' -52.5 NC_002794.1 + 128156 0.7 0.921614
Target:  5'- cGCGACGgcGGCUCgCGccGCgGACGGGUCg -3'
miRNA:   3'- aCGCUGCa-CCGAGgGC--UG-UUGUUUAG- -5'
10824 5' -52.5 NC_002794.1 + 123005 0.66 0.989762
Target:  5'- gUGCuGACGggccGGCUggccgucguguucCCCGACAAC--GUCg -3'
miRNA:   3'- -ACG-CUGCa---CCGA-------------GGGCUGUUGuuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.