Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10824 | 5' | -52.5 | NC_002794.1 | + | 103812 | 0.77 | 0.603688 |
Target: 5'- cUGCGACGgcGGCg-CCGACGugGAGUCg -3' miRNA: 3'- -ACGCUGCa-CCGagGGCUGUugUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 101422 | 0.66 | 0.98852 |
Target: 5'- -uCGACGUGGCUgCgCGACGAUc---- -3' miRNA: 3'- acGCUGCACCGAgG-GCUGUUGuuuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 58073 | 0.66 | 0.987007 |
Target: 5'- gGCGGCGggacgGGCggCCCGGCGcccGCGc--- -3' miRNA: 3'- aCGCUGCa----CCGa-GGGCUGU---UGUuuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 107059 | 0.66 | 0.985345 |
Target: 5'- gGCGGCG-GGCgcggCgCCGcCGGCAuGUCg -3' miRNA: 3'- aCGCUGCaCCGa---G-GGCuGUUGUuUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 102387 | 0.66 | 0.985345 |
Target: 5'- cGCGACGUGGUggaacuggucUUCCG-CGACGc--- -3' miRNA: 3'- aCGCUGCACCG----------AGGGCuGUUGUuuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 129048 | 0.67 | 0.983525 |
Target: 5'- cUGCGGuCGUGGCgCgCGACggUguGUCg -3' miRNA: 3'- -ACGCU-GCACCGaGgGCUGuuGuuUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 47756 | 0.67 | 0.983525 |
Target: 5'- gGCGGcCGUGG-UCgCGGCAcaacgcGCAGGUCg -3' miRNA: 3'- aCGCU-GCACCgAGgGCUGU------UGUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 30361 | 0.67 | 0.983525 |
Target: 5'- aGCGACaggcccUGGCUCuuGGCGAUc-GUCa -3' miRNA: 3'- aCGCUGc-----ACCGAGggCUGUUGuuUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 67431 | 0.67 | 0.982947 |
Target: 5'- gGCGGCGUgucgcgccgcuucgGGCUCCCGcCcGCAc--- -3' miRNA: 3'- aCGCUGCA--------------CCGAGGGCuGuUGUuuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 104468 | 0.66 | 0.987007 |
Target: 5'- gGCGGCGUgugcaggaugcgGGCggCCaCGGCGGcCGGGUCg -3' miRNA: 3'- aCGCUGCA------------CCGa-GG-GCUGUU-GUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 64023 | 0.66 | 0.98852 |
Target: 5'- gGCGAUGUcgGaGCUCCagugGACGGCGAAa- -3' miRNA: 3'- aCGCUGCA--C-CGAGGg---CUGUUGUUUag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 123005 | 0.66 | 0.989762 |
Target: 5'- gUGCuGACGggccGGCUggccgucguguucCCCGACAAC--GUCg -3' miRNA: 3'- -ACG-CUGCa---CCGA-------------GGGCUGUUGuuUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 59448 | 0.66 | 0.991134 |
Target: 5'- cGcCGcCG-GGCUCuCCGACGACAu--- -3' miRNA: 3'- aC-GCuGCaCCGAG-GGCUGUUGUuuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 182946 | 0.66 | 0.991134 |
Target: 5'- gGCGcCG-GGCUCgagCCGACGGCGGc-- -3' miRNA: 3'- aCGCuGCaCCGAG---GGCUGUUGUUuag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 59205 | 0.66 | 0.989893 |
Target: 5'- cGCGcACGUcGGCgUCUCGGCcGCGGcgCg -3' miRNA: 3'- aCGC-UGCA-CCG-AGGGCUGuUGUUuaG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 138710 | 0.66 | 0.989893 |
Target: 5'- gGCGGCGUGGaCUCgcgucgagCCGGCucGACGGGg- -3' miRNA: 3'- aCGCUGCACC-GAG--------GGCUG--UUGUUUag -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 63921 | 0.66 | 0.989893 |
Target: 5'- cGCGACc--GCcgCCCGGcCGGCGAGUCu -3' miRNA: 3'- aCGCUGcacCGa-GGGCU-GUUGUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 137874 | 0.66 | 0.989893 |
Target: 5'- gUGCGGCGUcuggugGGCgaugCCCGcCAggacgguacACAGGUCc -3' miRNA: 3'- -ACGCUGCA------CCGa---GGGCuGU---------UGUUUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 115930 | 0.66 | 0.989893 |
Target: 5'- cGCGGCGgcgGGCcggCCCG-CcGCGuGUCg -3' miRNA: 3'- aCGCUGCa--CCGa--GGGCuGuUGUuUAG- -5' |
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10824 | 5' | -52.5 | NC_002794.1 | + | 67714 | 0.66 | 0.989495 |
Target: 5'- aGCGGCaacaggGGCucggUCCCGGCGGCGgccacccgagcccgGAUCa -3' miRNA: 3'- aCGCUGca----CCG----AGGGCUGUUGU--------------UUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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