miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10825 5' -59.2 NC_002794.1 + 81457 0.66 0.845816
Target:  5'- gUCgagaGCUCUuauaUCGACGUCC-GCUCGGc -3'
miRNA:   3'- aAGag--CGAGG----GGCUGCAGGuCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 66311 0.66 0.845816
Target:  5'- -cCUCGCUUCgCGACucUCCAGCcucgCGAu -3'
miRNA:   3'- aaGAGCGAGGgGCUGc-AGGUCGa---GCU- -5'
10825 5' -59.2 NC_002794.1 + 195115 0.66 0.837979
Target:  5'- gUCUCGUgcgCCCgCGGCGcgcgCgGGCUCGc -3'
miRNA:   3'- aAGAGCGa--GGG-GCUGCa---GgUCGAGCu -5'
10825 5' -59.2 NC_002794.1 + 127108 0.66 0.837979
Target:  5'- ----gGCUCgCCGAUGaaCAGCUCGAg -3'
miRNA:   3'- aagagCGAGgGGCUGCagGUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 115234 0.66 0.837979
Target:  5'- aUCUgGCUCUugaCGACGUCCAcGUcgUCGGg -3'
miRNA:   3'- aAGAgCGAGGg--GCUGCAGGU-CG--AGCU- -5'
10825 5' -59.2 NC_002794.1 + 43779 0.66 0.837185
Target:  5'- aUCUCGCcgaacgCCCCG-CGUCCGacccgccGCUCc- -3'
miRNA:   3'- aAGAGCGa-----GGGGCuGCAGGU-------CGAGcu -5'
10825 5' -59.2 NC_002794.1 + 62165 0.66 0.833193
Target:  5'- gUCuUCGagaccacCCCCGGCugcaagcucauccccGUCCGGCUCGAc -3'
miRNA:   3'- aAG-AGCga-----GGGGCUG---------------CAGGUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 180679 0.66 0.821788
Target:  5'- -aCUCGCcggccgCuCCCGGCGcCCGGCgggCGGa -3'
miRNA:   3'- aaGAGCGa-----G-GGGCUGCaGGUCGa--GCU- -5'
10825 5' -59.2 NC_002794.1 + 65072 0.66 0.821788
Target:  5'- -cCUCGaaaaCCCGGCGg-CGGCUCGAu -3'
miRNA:   3'- aaGAGCgag-GGGCUGCagGUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 117922 0.66 0.821788
Target:  5'- gUCUUGaacgUCCCGAgGUCCAGgUCGc -3'
miRNA:   3'- aAGAGCga--GGGGCUgCAGGUCgAGCu -5'
10825 5' -59.2 NC_002794.1 + 21492 0.66 0.804954
Target:  5'- cUUCggaGC-CUCCGACcgucUCCGGCUCGAg -3'
miRNA:   3'- -AAGag-CGaGGGGCUGc---AGGUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 68791 0.67 0.787535
Target:  5'- cUCUCGCgCCCCGGCuaaCAGgaCGAc -3'
miRNA:   3'- aAGAGCGaGGGGCUGcagGUCgaGCU- -5'
10825 5' -59.2 NC_002794.1 + 126449 0.67 0.787535
Target:  5'- -cCUCGg-CCCUGG-GUCCGGCUCGu -3'
miRNA:   3'- aaGAGCgaGGGGCUgCAGGUCGAGCu -5'
10825 5' -59.2 NC_002794.1 + 109907 0.67 0.787535
Target:  5'- -gCUCGUUCgCUCGACccaGUCUAGCUCu- -3'
miRNA:   3'- aaGAGCGAG-GGGCUG---CAGGUCGAGcu -5'
10825 5' -59.2 NC_002794.1 + 16525 0.67 0.787535
Target:  5'- --gUCGCcaccgccgUCCCCGGCGUCCccGGCgUCGc -3'
miRNA:   3'- aagAGCG--------AGGGGCUGCAGG--UCG-AGCu -5'
10825 5' -59.2 NC_002794.1 + 136748 0.67 0.782205
Target:  5'- -gUUCGuCUCCCCGagcugGCGgacgcgcgccacgcCCAGCUCGAg -3'
miRNA:   3'- aaGAGC-GAGGGGC-----UGCa-------------GGUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 70836 0.67 0.778627
Target:  5'- gUUCUucaCGCgaUCCCCGACGUgCCGGcCUCc- -3'
miRNA:   3'- -AAGA---GCG--AGGGGCUGCA-GGUC-GAGcu -5'
10825 5' -59.2 NC_002794.1 + 194834 0.67 0.778627
Target:  5'- -gCUCGCggCCCGGCGucUCCAGC-CGc -3'
miRNA:   3'- aaGAGCGagGGGCUGC--AGGUCGaGCu -5'
10825 5' -59.2 NC_002794.1 + 26638 0.67 0.760449
Target:  5'- gUC-CGCgcaCCCgGACGgcggCCGGCUCGu -3'
miRNA:   3'- aAGaGCGa--GGGgCUGCa---GGUCGAGCu -5'
10825 5' -59.2 NC_002794.1 + 46433 0.68 0.741848
Target:  5'- aUCUCGacggaauUCCCCGACGcggCCAcGCUCu- -3'
miRNA:   3'- aAGAGCg------AGGGGCUGCa--GGU-CGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.