miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10825 5' -59.2 NC_002794.1 + 63614 0.68 0.73241
Target:  5'- cUCUCGCUCCUCaACcugCCGGC-CGAg -3'
miRNA:   3'- aAGAGCGAGGGGcUGca-GGUCGaGCU- -5'
10825 5' -59.2 NC_002794.1 + 74047 0.68 0.73241
Target:  5'- ----aGCcccgagCCCCGACGUCUGGCUCa- -3'
miRNA:   3'- aagagCGa-----GGGGCUGCAGGUCGAGcu -5'
10825 5' -59.2 NC_002794.1 + 69354 0.68 0.73241
Target:  5'- aUCUCGUUCCCCG-CGgagaUCgGGCgCGAc -3'
miRNA:   3'- aAGAGCGAGGGGCuGC----AGgUCGaGCU- -5'
10825 5' -59.2 NC_002794.1 + 67045 0.68 0.722889
Target:  5'- --gUCGCggaCCCGGCGUCCgugGGCUCc- -3'
miRNA:   3'- aagAGCGag-GGGCUGCAGG---UCGAGcu -5'
10825 5' -59.2 NC_002794.1 + 31534 0.68 0.722889
Target:  5'- ---gCGCggcgagCCCCGACGUCUccgagAGCUCGc -3'
miRNA:   3'- aagaGCGa-----GGGGCUGCAGG-----UCGAGCu -5'
10825 5' -59.2 NC_002794.1 + 182924 0.68 0.693926
Target:  5'- gUCgUCGCUCUggaaguaguCCGGCGcCgGGCUCGAg -3'
miRNA:   3'- aAG-AGCGAGG---------GGCUGCaGgUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 37257 0.68 0.693926
Target:  5'- cUCUCGCUCUCCGuCGgCgGGCgcgCGGg -3'
miRNA:   3'- aAGAGCGAGGGGCuGCaGgUCGa--GCU- -5'
10825 5' -59.2 NC_002794.1 + 14924 0.69 0.65467
Target:  5'- -gCUCGCggUCCCGACGUgcucucgaUCGGCUCGc -3'
miRNA:   3'- aaGAGCGa-GGGGCUGCA--------GGUCGAGCu -5'
10825 5' -59.2 NC_002794.1 + 66380 0.69 0.644794
Target:  5'- cUCUCgucgaacgcggGCUCCCCGuCGUCCcGC-CGAc -3'
miRNA:   3'- aAGAG-----------CGAGGGGCuGCAGGuCGaGCU- -5'
10825 5' -59.2 NC_002794.1 + 106552 0.71 0.566044
Target:  5'- -aCUCGCUCUgCGACG-CCAuGCUCa- -3'
miRNA:   3'- aaGAGCGAGGgGCUGCaGGU-CGAGcu -5'
10825 5' -59.2 NC_002794.1 + 114825 0.72 0.508595
Target:  5'- ---gCGCUCUCCGGCGgccgagUCGGCUCGGa -3'
miRNA:   3'- aagaGCGAGGGGCUGCa-----GGUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 46203 0.72 0.463571
Target:  5'- -gCUCGCUCgCCGccguuccggccagcuCGUCCAGCUCGc -3'
miRNA:   3'- aaGAGCGAGgGGCu--------------GCAGGUCGAGCu -5'
10825 5' -59.2 NC_002794.1 + 113640 0.73 0.445798
Target:  5'- gUCUCGagcagcggcccggcgUCCUCGGCGUCCAGCgcggCGAg -3'
miRNA:   3'- aAGAGCg--------------AGGGGCUGCAGGUCGa---GCU- -5'
10825 5' -59.2 NC_002794.1 + 49193 0.73 0.410596
Target:  5'- cUUCUCGUcCCCCG-CGUCCAGaaauUCGAg -3'
miRNA:   3'- -AAGAGCGaGGGGCuGCAGGUCg---AGCU- -5'
10825 5' -59.2 NC_002794.1 + 48096 0.74 0.370086
Target:  5'- ---cCGCUCgCCGGCGUCaGGCUCGAg -3'
miRNA:   3'- aagaGCGAGgGGCUGCAGgUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 68844 0.75 0.354664
Target:  5'- -gCUCGCggUCCCCGACGaCCccggAGCUCGGg -3'
miRNA:   3'- aaGAGCG--AGGGGCUGCaGG----UCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 44185 0.76 0.296932
Target:  5'- cUCgUCGaCUCCgggcgaagccgggCCGACGUCCGGCUCGGg -3'
miRNA:   3'- aAG-AGC-GAGG-------------GGCUGCAGGUCGAGCU- -5'
10825 5' -59.2 NC_002794.1 + 61341 1.06 0.003113
Target:  5'- uUUCUCGCUCCCCGACGUCCAGCUCGAc -3'
miRNA:   3'- -AAGAGCGAGGGGCUGCAGGUCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.