Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10825 | 5' | -59.2 | NC_002794.1 | + | 44185 | 0.76 | 0.296932 |
Target: 5'- cUCgUCGaCUCCgggcgaagccgggCCGACGUCCGGCUCGGg -3' miRNA: 3'- aAG-AGC-GAGG-------------GGCUGCAGGUCGAGCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 126449 | 0.67 | 0.787535 |
Target: 5'- -cCUCGg-CCCUGG-GUCCGGCUCGu -3' miRNA: 3'- aaGAGCgaGGGGCUgCAGGUCGAGCu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 109907 | 0.67 | 0.787535 |
Target: 5'- -gCUCGUUCgCUCGACccaGUCUAGCUCu- -3' miRNA: 3'- aaGAGCGAG-GGGCUG---CAGGUCGAGcu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 16525 | 0.67 | 0.787535 |
Target: 5'- --gUCGCcaccgccgUCCCCGGCGUCCccGGCgUCGc -3' miRNA: 3'- aagAGCG--------AGGGGCUGCAGG--UCG-AGCu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 136748 | 0.67 | 0.782205 |
Target: 5'- -gUUCGuCUCCCCGagcugGCGgacgcgcgccacgcCCAGCUCGAg -3' miRNA: 3'- aaGAGC-GAGGGGC-----UGCa-------------GGUCGAGCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 70836 | 0.67 | 0.778627 |
Target: 5'- gUUCUucaCGCgaUCCCCGACGUgCCGGcCUCc- -3' miRNA: 3'- -AAGA---GCG--AGGGGCUGCA-GGUC-GAGcu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 194834 | 0.67 | 0.778627 |
Target: 5'- -gCUCGCggCCCGGCGucUCCAGC-CGc -3' miRNA: 3'- aaGAGCGagGGGCUGC--AGGUCGaGCu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 26638 | 0.67 | 0.760449 |
Target: 5'- gUC-CGCgcaCCCgGACGgcggCCGGCUCGu -3' miRNA: 3'- aAGaGCGa--GGGgCUGCa---GGUCGAGCu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 69354 | 0.68 | 0.73241 |
Target: 5'- aUCUCGUUCCCCG-CGgagaUCgGGCgCGAc -3' miRNA: 3'- aAGAGCGAGGGGCuGC----AGgUCGaGCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 68791 | 0.67 | 0.787535 |
Target: 5'- cUCUCGCgCCCCGGCuaaCAGgaCGAc -3' miRNA: 3'- aAGAGCGaGGGGCUGcagGUCgaGCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 180679 | 0.66 | 0.821788 |
Target: 5'- -aCUCGCcggccgCuCCCGGCGcCCGGCgggCGGa -3' miRNA: 3'- aaGAGCGa-----G-GGGCUGCaGGUCGa--GCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 65072 | 0.66 | 0.821788 |
Target: 5'- -cCUCGaaaaCCCGGCGg-CGGCUCGAu -3' miRNA: 3'- aaGAGCgag-GGGCUGCagGUCGAGCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 66311 | 0.66 | 0.845816 |
Target: 5'- -cCUCGCUUCgCGACucUCCAGCcucgCGAu -3' miRNA: 3'- aaGAGCGAGGgGCUGc-AGGUCGa---GCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 195115 | 0.66 | 0.837979 |
Target: 5'- gUCUCGUgcgCCCgCGGCGcgcgCgGGCUCGc -3' miRNA: 3'- aAGAGCGa--GGG-GCUGCa---GgUCGAGCu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 127108 | 0.66 | 0.837979 |
Target: 5'- ----gGCUCgCCGAUGaaCAGCUCGAg -3' miRNA: 3'- aagagCGAGgGGCUGCagGUCGAGCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 115234 | 0.66 | 0.837979 |
Target: 5'- aUCUgGCUCUugaCGACGUCCAcGUcgUCGGg -3' miRNA: 3'- aAGAgCGAGGg--GCUGCAGGU-CG--AGCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 62165 | 0.66 | 0.833193 |
Target: 5'- gUCuUCGagaccacCCCCGGCugcaagcucauccccGUCCGGCUCGAc -3' miRNA: 3'- aAG-AGCga-----GGGGCUG---------------CAGGUCGAGCU- -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 43779 | 0.66 | 0.837185 |
Target: 5'- aUCUCGCcgaacgCCCCG-CGUCCGacccgccGCUCc- -3' miRNA: 3'- aAGAGCGa-----GGGGCuGCAGGU-------CGAGcu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 117922 | 0.66 | 0.821788 |
Target: 5'- gUCUUGaacgUCCCGAgGUCCAGgUCGc -3' miRNA: 3'- aAGAGCga--GGGGCUgCAGGUCgAGCu -5' |
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10825 | 5' | -59.2 | NC_002794.1 | + | 21492 | 0.66 | 0.804954 |
Target: 5'- cUUCggaGC-CUCCGACcgucUCCGGCUCGAg -3' miRNA: 3'- -AAGag-CGaGGGGCUGc---AGGUCGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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