miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10826 3' -55 NC_002794.1 + 111118 0.65 0.95909
Target:  5'- gGCCgucgacGGcgccGGCGGCCGG-UGCUCCa- -3'
miRNA:   3'- -CGGa-----CCuu--CCGUUGGUCuACGAGGac -5'
10826 3' -55 NC_002794.1 + 113814 0.65 0.958725
Target:  5'- cGCCUucgcggcGGcgcucGGCcuCCAGGUGCUUCUGc -3'
miRNA:   3'- -CGGA-------CCuu---CCGuuGGUCUACGAGGAC- -5'
10826 3' -55 NC_002794.1 + 96103 0.66 0.956865
Target:  5'- aCCUGGAaaGGGuCGACgGGGUGgucgacguugaccgcCUCCUGc -3'
miRNA:   3'- cGGACCU--UCC-GUUGgUCUAC---------------GAGGAC- -5'
10826 3' -55 NC_002794.1 + 155652 0.66 0.951357
Target:  5'- gGUCUGauGAGGGCAcuacaGCgCAGAUaCUCCUGu -3'
miRNA:   3'- -CGGAC--CUUCCGU-----UG-GUCUAcGAGGAC- -5'
10826 3' -55 NC_002794.1 + 103667 0.66 0.950118
Target:  5'- uGCCggugcgaguggaagUGGAAgGGCAGCgAGAUGgcCUCCUu -3'
miRNA:   3'- -CGG--------------ACCUU-CCGUUGgUCUAC--GAGGAc -5'
10826 3' -55 NC_002794.1 + 119132 0.66 0.942702
Target:  5'- gGCCUGGcAGGCGuUCGGGUGgUCg-- -3'
miRNA:   3'- -CGGACCuUCCGUuGGUCUACgAGgac -5'
10826 3' -55 NC_002794.1 + 115826 0.66 0.942702
Target:  5'- cGCCUGGAucGGCGGggcCCGGcggGCUcgggCCUGg -3'
miRNA:   3'- -CGGACCUu-CCGUU---GGUCua-CGA----GGAC- -5'
10826 3' -55 NC_002794.1 + 91475 0.66 0.942702
Target:  5'- cGCCgGGcGAGcGCGACCAGcUGUUgCUGu -3'
miRNA:   3'- -CGGaCC-UUC-CGUUGGUCuACGAgGAC- -5'
10826 3' -55 NC_002794.1 + 153529 0.66 0.942702
Target:  5'- gGUCgGGAgagguGGGCGGCUGGAUGCcCCa- -3'
miRNA:   3'- -CGGaCCU-----UCCGUUGGUCUACGaGGac -5'
10826 3' -55 NC_002794.1 + 130686 0.66 0.93754
Target:  5'- gGCCUcguGGGAGGCGccgugucGgCAGAUGaucuUCCUGa -3'
miRNA:   3'- -CGGA---CCUUCCGU-------UgGUCUACg---AGGAC- -5'
10826 3' -55 NC_002794.1 + 184913 0.67 0.933102
Target:  5'- cGCgCgGGAAcaucGGCAGCCGGcgGUcgUCCUGc -3'
miRNA:   3'- -CG-GaCCUU----CCGUUGGUCuaCG--AGGAC- -5'
10826 3' -55 NC_002794.1 + 61103 0.67 0.927944
Target:  5'- uGCuCUGGGagaaAGGgGACCAGcucGUGCUCUg- -3'
miRNA:   3'- -CG-GACCU----UCCgUUGGUC---UACGAGGac -5'
10826 3' -55 NC_002794.1 + 160922 0.68 0.904924
Target:  5'- uGCCUGGuuGGCGAucggcCCAGGUGgaCUg- -3'
miRNA:   3'- -CGGACCuuCCGUU-----GGUCUACgaGGac -5'
10826 3' -55 NC_002794.1 + 101201 0.68 0.904299
Target:  5'- uCCUGGAggAGGCGGCCgcccggcAGAUGgUCgUGc -3'
miRNA:   3'- cGGACCU--UCCGUUGG-------UCUACgAGgAC- -5'
10826 3' -55 NC_002794.1 + 130211 0.68 0.891999
Target:  5'- gGCCgugcAGGCGACCGacggGCUCCUGa -3'
miRNA:   3'- -CGGaccuUCCGUUGGUcua-CGAGGAC- -5'
10826 3' -55 NC_002794.1 + 86288 0.68 0.878161
Target:  5'- aGCCgggacGGAugcuccGGCccgagcccGACCGGAUGCUCCg- -3'
miRNA:   3'- -CGGa----CCUu-----CCG--------UUGGUCUACGAGGac -5'
10826 3' -55 NC_002794.1 + 86432 0.68 0.878161
Target:  5'- aGCCgggacGGAugcuccGGCucgagcccGACCGGAUGCUCCg- -3'
miRNA:   3'- -CGGa----CCUu-----CCG--------UUGGUCUACGAGGac -5'
10826 3' -55 NC_002794.1 + 86600 0.68 0.878161
Target:  5'- aGCCgggacGGAugcuccGGCucgagcccGACCGGAUGCUCCg- -3'
miRNA:   3'- -CGGa----CCUu-----CCG--------UUGGUCUACGAGGac -5'
10826 3' -55 NC_002794.1 + 86240 0.68 0.878161
Target:  5'- aGCCgggacGGAugcuccGGCucgagcccGACCGGAUGCUCCg- -3'
miRNA:   3'- -CGGa----CCUu-----CCG--------UUGGUCUACGAGGac -5'
10826 3' -55 NC_002794.1 + 155124 0.68 0.87091
Target:  5'- cCCUGGAGGGUGGCCAGGcaccGUUCg-- -3'
miRNA:   3'- cGGACCUUCCGUUGGUCUa---CGAGgac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.