miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10826 5' -57.7 NC_002794.1 + 48054 0.66 0.893817
Target:  5'- gUGC-UGGGCACggcGCUGaugGCCGgCCAGc -3'
miRNA:   3'- -ACGuGCCCGUGa--CGAUg--UGGCaGGUC- -5'
10826 5' -57.7 NC_002794.1 + 14605 0.66 0.893817
Target:  5'- cGCGcCGGGCACcGCgacgGgGCCGgagacggggCCGGg -3'
miRNA:   3'- aCGU-GCCCGUGaCGa---UgUGGCa--------GGUC- -5'
10826 5' -57.7 NC_002794.1 + 135981 0.66 0.893817
Target:  5'- gGCGcCGGGCucCU-CUuCGCUGUCCGGg -3'
miRNA:   3'- aCGU-GCCCGu-GAcGAuGUGGCAGGUC- -5'
10826 5' -57.7 NC_002794.1 + 184901 0.66 0.887222
Target:  5'- gGCcCGGGCACUcGCgcgggaACAUCGgcagCCGGc -3'
miRNA:   3'- aCGuGCCCGUGA-CGa-----UGUGGCa---GGUC- -5'
10826 5' -57.7 NC_002794.1 + 56912 0.66 0.887222
Target:  5'- gGcCACGGGCGCcggGCUGCcgGCCucgcaCCAGa -3'
miRNA:   3'- aC-GUGCCCGUGa--CGAUG--UGGca---GGUC- -5'
10826 5' -57.7 NC_002794.1 + 143550 0.66 0.88655
Target:  5'- gGCACGaGCACgguggcccagccgUGC-GCGCCGUCCu- -3'
miRNA:   3'- aCGUGCcCGUG-------------ACGaUGUGGCAGGuc -5'
10826 5' -57.7 NC_002794.1 + 104535 0.66 0.880411
Target:  5'- gGCGCGGGaagaGCUGCgcCAgCGUCa-- -3'
miRNA:   3'- aCGUGCCCg---UGACGauGUgGCAGguc -5'
10826 5' -57.7 NC_002794.1 + 36011 0.66 0.880411
Target:  5'- gGCuCGGGCg--GCggaaucCGCCGUCCGGc -3'
miRNA:   3'- aCGuGCCCGugaCGau----GUGGCAGGUC- -5'
10826 5' -57.7 NC_002794.1 + 157945 0.66 0.880411
Target:  5'- aGC-CGGGUACcGUguuguCCGUCCGGa -3'
miRNA:   3'- aCGuGCCCGUGaCGaugu-GGCAGGUC- -5'
10826 5' -57.7 NC_002794.1 + 49102 0.66 0.880411
Target:  5'- cGCGCcGGCGCUcggcgucCUGCACCGggaccggCCGGa -3'
miRNA:   3'- aCGUGcCCGUGAc------GAUGUGGCa------GGUC- -5'
10826 5' -57.7 NC_002794.1 + 193056 0.66 0.880411
Target:  5'- aGCGCccGCACcgGCUGCggGCCGUCgCGGg -3'
miRNA:   3'- aCGUGccCGUGa-CGAUG--UGGCAG-GUC- -5'
10826 5' -57.7 NC_002794.1 + 117755 0.66 0.880411
Target:  5'- cGCGCGuGGUGC-GCaGCAggUCGUCCAGc -3'
miRNA:   3'- aCGUGC-CCGUGaCGaUGU--GGCAGGUC- -5'
10826 5' -57.7 NC_002794.1 + 91234 0.66 0.879718
Target:  5'- gGCGCGGcggccgucgggcuGCGCUcGCggACGCCGUUCGu -3'
miRNA:   3'- aCGUGCC-------------CGUGA-CGa-UGUGGCAGGUc -5'
10826 5' -57.7 NC_002794.1 + 89931 0.66 0.873389
Target:  5'- gGCGCGGGCGCcgGCUucucgggaGCcgaCGUCgAGg -3'
miRNA:   3'- aCGUGCCCGUGa-CGA--------UGug-GCAGgUC- -5'
10826 5' -57.7 NC_002794.1 + 188782 0.66 0.873389
Target:  5'- gUGCAgCGGuaGCggccgGCcccgccgaGCGCCGUCCAGg -3'
miRNA:   3'- -ACGU-GCCcgUGa----CGa-------UGUGGCAGGUC- -5'
10826 5' -57.7 NC_002794.1 + 108638 0.66 0.866159
Target:  5'- --uGCGGGCACUGCUuaaACC-UCgGGa -3'
miRNA:   3'- acgUGCCCGUGACGAug-UGGcAGgUC- -5'
10826 5' -57.7 NC_002794.1 + 40135 0.66 0.866159
Target:  5'- aGcCACGGGCucuccgcgGCUuCUGCG-CGUCCAGg -3'
miRNA:   3'- aC-GUGCCCG--------UGAcGAUGUgGCAGGUC- -5'
10826 5' -57.7 NC_002794.1 + 891 0.66 0.866159
Target:  5'- cGCGCGGGCcgGgUGCcaACGCCGcUCCc- -3'
miRNA:   3'- aCGUGCCCG--UgACGa-UGUGGC-AGGuc -5'
10826 5' -57.7 NC_002794.1 + 152241 0.66 0.865425
Target:  5'- cGuCGCGcGCACcGUcgccgucggacagUACGCCGUCCAGa -3'
miRNA:   3'- aC-GUGCcCGUGaCG-------------AUGUGGCAGGUC- -5'
10826 5' -57.7 NC_002794.1 + 141433 0.66 0.863951
Target:  5'- gGCGgGGGCGCcgGggGCGCCGggagcggcgcggcgUCCGGa -3'
miRNA:   3'- aCGUgCCCGUGa-CgaUGUGGC--------------AGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.