miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 3' -58.7 NC_002794.1 + 185338 0.66 0.871901
Target:  5'- cGCGucgACCgcUCGCGCGC-CgCCGCGAg -3'
miRNA:   3'- -UGCucaUGG--AGUGCGCGaG-GGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 75208 0.66 0.871901
Target:  5'- cCGAGUcGCgaCAUGuCGUUCCUGCGAg -3'
miRNA:   3'- uGCUCA-UGgaGUGC-GCGAGGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 150636 0.66 0.865466
Target:  5'- aGCcAGUAUCccggCACGCGCgucgaccugggcuggCCCGCGAa -3'
miRNA:   3'- -UGcUCAUGGa---GUGCGCGa--------------GGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 191527 0.66 0.864742
Target:  5'- gGCGucgGCC-CGCGC-CUCCCGCcGCa -3'
miRNA:   3'- -UGCucaUGGaGUGCGcGAGGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 188555 0.66 0.864742
Target:  5'- gGCGGGUACUgcugccgCACGUGCcgacacaacgCCCGCcGCu -3'
miRNA:   3'- -UGCUCAUGGa------GUGCGCGa---------GGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 124921 0.66 0.864742
Target:  5'- gGCGAGU-CCUCgguGCGCGUggaCCuCGACu -3'
miRNA:   3'- -UGCUCAuGGAG---UGCGCGag-GGcGCUG- -5'
10827 3' -58.7 NC_002794.1 + 150450 0.66 0.862556
Target:  5'- gGCGGGUgcggaucccggaagGCucccgguucuggCUCACGUGCaCCUGCGGCg -3'
miRNA:   3'- -UGCUCA--------------UG------------GAGUGCGCGaGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 87832 0.66 0.857388
Target:  5'- uGCGcGUAUC-CGCGCGCauauaCCCGCG-Cg -3'
miRNA:   3'- -UGCuCAUGGaGUGCGCGa----GGGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 71573 0.66 0.857388
Target:  5'- gGCGAu--CCgguaCACGCGCUUCCacuGCGGCu -3'
miRNA:   3'- -UGCUcauGGa---GUGCGCGAGGG---CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 72452 0.66 0.857388
Target:  5'- gGCG-GcGCCcCGCGCccgGC-CCCGCGGCg -3'
miRNA:   3'- -UGCuCaUGGaGUGCG---CGaGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 71814 0.66 0.854393
Target:  5'- gGCGAGgccGCCUCGuCGCGaggaucgccgucCCCGuCGACg -3'
miRNA:   3'- -UGCUCa--UGGAGU-GCGCga----------GGGC-GCUG- -5'
10827 3' -58.7 NC_002794.1 + 144439 0.66 0.849845
Target:  5'- cCGAGUGCagccgUGCGCGCaCCugCGCGACu -3'
miRNA:   3'- uGCUCAUGga---GUGCGCGaGG--GCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 36360 0.66 0.849845
Target:  5'- cGCGGccACCgggUGCGCgCCCGCGGCg -3'
miRNA:   3'- -UGCUcaUGGaguGCGCGaGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 150366 0.66 0.842118
Target:  5'- cCGAGaACCUC-CGCgucuuucuacGCUCCCG-GGCg -3'
miRNA:   3'- uGCUCaUGGAGuGCG----------CGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 81791 0.66 0.834214
Target:  5'- cGCGAGauuuccgcUGCCUCAgcCGCGCgcaccgcaUCCCGCa-- -3'
miRNA:   3'- -UGCUC--------AUGGAGU--GCGCG--------AGGGCGcug -5'
10827 3' -58.7 NC_002794.1 + 181238 0.66 0.834214
Target:  5'- gGCGAcGgcgcGCCUuccacCGCGCGUgCCCGCGAa -3'
miRNA:   3'- -UGCU-Ca---UGGA-----GUGCGCGaGGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 12359 0.66 0.834214
Target:  5'- cGCGucacGUACCUCgGCGUGCUCgccugCCGCG-Cu -3'
miRNA:   3'- -UGCu---CAUGGAG-UGCGCGAG-----GGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 31 0.67 0.82614
Target:  5'- aACGAG-GCCgcCGCGgGCUCUCG-GACg -3'
miRNA:   3'- -UGCUCaUGGa-GUGCgCGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 144892 0.67 0.82614
Target:  5'- gGCGAG-ACgCUCGCGcCGCUgggcCCCGCcGCc -3'
miRNA:   3'- -UGCUCaUG-GAGUGC-GCGA----GGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 63939 0.67 0.82614
Target:  5'- gGCGAGUcucgaguccgacGCCUCGcCGCGCgCCCgaaucaccgccGUGACc -3'
miRNA:   3'- -UGCUCA------------UGGAGU-GCGCGaGGG-----------CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.