Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 185338 | 0.66 | 0.871901 |
Target: 5'- cGCGucgACCgcUCGCGCGC-CgCCGCGAg -3' miRNA: 3'- -UGCucaUGG--AGUGCGCGaG-GGCGCUg -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 12359 | 0.66 | 0.834214 |
Target: 5'- cGCGucacGUACCUCgGCGUGCUCgccugCCGCG-Cu -3' miRNA: 3'- -UGCu---CAUGGAG-UGCGCGAG-----GGCGCuG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 150366 | 0.66 | 0.842118 |
Target: 5'- cCGAGaACCUC-CGCgucuuucuacGCUCCCG-GGCg -3' miRNA: 3'- uGCUCaUGGAGuGCG----------CGAGGGCgCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 181238 | 0.66 | 0.834214 |
Target: 5'- gGCGAcGgcgcGCCUuccacCGCGCGUgCCCGCGAa -3' miRNA: 3'- -UGCU-Ca---UGGA-----GUGCGCGaGGGCGCUg -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 81791 | 0.66 | 0.834214 |
Target: 5'- cGCGAGauuuccgcUGCCUCAgcCGCGCgcaccgcaUCCCGCa-- -3' miRNA: 3'- -UGCUC--------AUGGAGU--GCGCG--------AGGGCGcug -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 144439 | 0.66 | 0.849845 |
Target: 5'- cCGAGUGCagccgUGCGCGCaCCugCGCGACu -3' miRNA: 3'- uGCUCAUGga---GUGCGCGaGG--GCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 71814 | 0.66 | 0.854393 |
Target: 5'- gGCGAGgccGCCUCGuCGCGaggaucgccgucCCCGuCGACg -3' miRNA: 3'- -UGCUCa--UGGAGU-GCGCga----------GGGC-GCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 36360 | 0.66 | 0.849845 |
Target: 5'- cGCGGccACCgggUGCGCgCCCGCGGCg -3' miRNA: 3'- -UGCUcaUGGaguGCGCGaGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 87832 | 0.66 | 0.857388 |
Target: 5'- uGCGcGUAUC-CGCGCGCauauaCCCGCG-Cg -3' miRNA: 3'- -UGCuCAUGGaGUGCGCGa----GGGCGCuG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 71573 | 0.66 | 0.857388 |
Target: 5'- gGCGAu--CCgguaCACGCGCUUCCacuGCGGCu -3' miRNA: 3'- -UGCUcauGGa---GUGCGCGAGGG---CGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 191527 | 0.66 | 0.864742 |
Target: 5'- gGCGucgGCC-CGCGC-CUCCCGCcGCa -3' miRNA: 3'- -UGCucaUGGaGUGCGcGAGGGCGcUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 150636 | 0.66 | 0.865466 |
Target: 5'- aGCcAGUAUCccggCACGCGCgucgaccugggcuggCCCGCGAa -3' miRNA: 3'- -UGcUCAUGGa---GUGCGCGa--------------GGGCGCUg -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 75208 | 0.66 | 0.871901 |
Target: 5'- cCGAGUcGCgaCAUGuCGUUCCUGCGAg -3' miRNA: 3'- uGCUCA-UGgaGUGC-GCGAGGGCGCUg -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 188555 | 0.66 | 0.864742 |
Target: 5'- gGCGGGUACUgcugccgCACGUGCcgacacaacgCCCGCcGCu -3' miRNA: 3'- -UGCUCAUGGa------GUGCGCGa---------GGGCGcUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 124921 | 0.66 | 0.864742 |
Target: 5'- gGCGAGU-CCUCgguGCGCGUggaCCuCGACu -3' miRNA: 3'- -UGCUCAuGGAG---UGCGCGag-GGcGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 72452 | 0.66 | 0.857388 |
Target: 5'- gGCG-GcGCCcCGCGCccgGC-CCCGCGGCg -3' miRNA: 3'- -UGCuCaUGGaGUGCG---CGaGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 150450 | 0.66 | 0.862556 |
Target: 5'- gGCGGGUgcggaucccggaagGCucccgguucuggCUCACGUGCaCCUGCGGCg -3' miRNA: 3'- -UGCUCA--------------UG------------GAGUGCGCGaGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 31 | 0.67 | 0.82614 |
Target: 5'- aACGAG-GCCgcCGCGgGCUCUCG-GACg -3' miRNA: 3'- -UGCUCaUGGa-GUGCgCGAGGGCgCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 144892 | 0.67 | 0.82614 |
Target: 5'- gGCGAG-ACgCUCGCGcCGCUgggcCCCGCcGCc -3' miRNA: 3'- -UGCUCaUG-GAGUGC-GCGA----GGGCGcUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 63939 | 0.67 | 0.82614 |
Target: 5'- gGCGAGUcucgaguccgacGCCUCGcCGCGCgCCCgaaucaccgccGUGACc -3' miRNA: 3'- -UGCUCA------------UGGAGU-GCGCGaGGG-----------CGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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