Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 44354 | 0.68 | 0.728158 |
Target: 5'- gGCGAG-ACCgagagcgcggCGgGCGCgacgUCCGCGACg -3' miRNA: 3'- -UGCUCaUGGa---------GUgCGCGa---GGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 21951 | 0.68 | 0.737615 |
Target: 5'- uCGAagGCCgUCgGC-CGCUCCCGCGGCg -3' miRNA: 3'- uGCUcaUGG-AG-UGcGCGAGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 49796 | 0.68 | 0.737615 |
Target: 5'- cACGAGccgaGCCagGaGCaGCUCCCGCGGCc -3' miRNA: 3'- -UGCUCa---UGGagUgCG-CGAGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 80631 | 0.68 | 0.728158 |
Target: 5'- cCGAGcACCUCGCGaccgGCgaCCCGCaGACg -3' miRNA: 3'- uGCUCaUGGAGUGCg---CGa-GGGCG-CUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 899 | 0.68 | 0.756264 |
Target: 5'- cCGGGUGCCa-ACGcCGCUCcCCGCGcCu -3' miRNA: 3'- uGCUCAUGGagUGC-GCGAG-GGCGCuG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 152556 | 0.68 | 0.76544 |
Target: 5'- -aGAGUGCCaggaGCgGCGCUUcaccgCCGCGGCg -3' miRNA: 3'- ugCUCAUGGag--UG-CGCGAG-----GGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 140912 | 0.68 | 0.774505 |
Target: 5'- gGCGGG-ACCUgcagGCGCGCUgCCUGCGcACc -3' miRNA: 3'- -UGCUCaUGGAg---UGCGCGA-GGGCGC-UG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 156980 | 0.68 | 0.766351 |
Target: 5'- cACGcGUGCCUCuauguaagguccuaGCGggCCCGCGGCc -3' miRNA: 3'- -UGCuCAUGGAGug------------CGCgaGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 190648 | 0.68 | 0.76544 |
Target: 5'- gGCGuGUGCaggaUCACGuCGCgCCCGCcGCg -3' miRNA: 3'- -UGCuCAUGg---AGUGC-GCGaGGGCGcUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 82789 | 0.68 | 0.76544 |
Target: 5'- cCGAccGCCgcgucCACGCGCgccgcgaCCCGCGGCu -3' miRNA: 3'- uGCUcaUGGa----GUGCGCGa------GGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 72154 | 0.68 | 0.76544 |
Target: 5'- cCGAGUACgCgcaCACGCGCUgCCGguaGGCc -3' miRNA: 3'- uGCUCAUG-Ga--GUGCGCGAgGGCg--CUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 47891 | 0.68 | 0.76544 |
Target: 5'- -aGAGgcucAgCUCGCGCGgUCCCGCacGACc -3' miRNA: 3'- ugCUCa---UgGAGUGCGCgAGGGCG--CUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 40122 | 0.68 | 0.76544 |
Target: 5'- cGCGAGaGCggagagcCACGgGCUCuCCGCGGCu -3' miRNA: 3'- -UGCUCaUGga-----GUGCgCGAG-GGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 12312 | 0.69 | 0.69936 |
Target: 5'- cGCGGGacuCCUC-CGCGgUCCgCGUGACc -3' miRNA: 3'- -UGCUCau-GGAGuGCGCgAGG-GCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 189136 | 0.69 | 0.709023 |
Target: 5'- uGCGGG-GCCgccaGCGCcagacuCUCCCGCGGCa -3' miRNA: 3'- -UGCUCaUGGag--UGCGc-----GAGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 90267 | 0.69 | 0.709023 |
Target: 5'- cGCGAGUGguUUUCGCGCGCgcggucgagCUCGcCGACg -3' miRNA: 3'- -UGCUCAU--GGAGUGCGCGa--------GGGC-GCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 141682 | 0.69 | 0.718625 |
Target: 5'- gACGGGUcGCCgUACGCGgUCCCGUcguGGCc -3' miRNA: 3'- -UGCUCA-UGGaGUGCGCgAGGGCG---CUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 78401 | 0.69 | 0.718625 |
Target: 5'- gACGAG-GCCUCGcCGCGaCUCuCCGCucccGGCg -3' miRNA: 3'- -UGCUCaUGGAGU-GCGC-GAG-GGCG----CUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 192653 | 0.69 | 0.718625 |
Target: 5'- -----cGCCgcCGCGCGCUCgCGCGACu -3' miRNA: 3'- ugcucaUGGa-GUGCGCGAGgGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 102040 | 0.69 | 0.689644 |
Target: 5'- cCGAGccggcguuCCUCGCGCGCUUCUucgagccggGCGACc -3' miRNA: 3'- uGCUCau------GGAGUGCGCGAGGG---------CGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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