miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 3' -58.7 NC_002794.1 + 60450 1.09 0.002383
Target:  5'- gACGAGUACCUCACGCGCUCCCGCGACu -3'
miRNA:   3'- -UGCUCAUGGAGUGCGCGAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 72728 0.76 0.329822
Target:  5'- cAUGAcgGCC-C-CGCGCUCCCGCGGCg -3'
miRNA:   3'- -UGCUcaUGGaGuGCGCGAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 178912 0.75 0.375051
Target:  5'- uGCGGGUucGCCUCgGCGUGUUCCUGuCGGCu -3'
miRNA:   3'- -UGCUCA--UGGAG-UGCGCGAGGGC-GCUG- -5'
10827 3' -58.7 NC_002794.1 + 184559 0.74 0.40745
Target:  5'- uCGGacGCCUCACGCGC-CgCCGCGGCg -3'
miRNA:   3'- uGCUcaUGGAGUGCGCGaG-GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 183007 0.72 0.504852
Target:  5'- cGCGGGcGCCcCGCGCGCgCCCGCcGCc -3'
miRNA:   3'- -UGCUCaUGGaGUGCGCGaGGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 145533 0.72 0.53317
Target:  5'- cCGAGcGCCUCGgGCGC-CCCgaGCGGCc -3'
miRNA:   3'- uGCUCaUGGAGUgCGCGaGGG--CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 190580 0.72 0.543697
Target:  5'- aACGGGUAgCUCuCGCGCcgcagcuccuccaggUCCGCGACa -3'
miRNA:   3'- -UGCUCAUgGAGuGCGCGa--------------GGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 15296 0.71 0.581514
Target:  5'- cGCGAGcgACuaCUCGCGCGCccaUCCCGCagguGACg -3'
miRNA:   3'- -UGCUCa-UG--GAGUGCGCG---AGGGCG----CUG- -5'
10827 3' -58.7 NC_002794.1 + 85037 0.71 0.598179
Target:  5'- uCGGGUGCCUCGggccCGCGCUCgacgaccggccacgCCGCGuCu -3'
miRNA:   3'- uGCUCAUGGAGU----GCGCGAG--------------GGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 113857 0.71 0.601128
Target:  5'- gGCGugcAGUuccgGCCagGCGCGCUCggCCGCGGCg -3'
miRNA:   3'- -UGC---UCA----UGGagUGCGCGAG--GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 60961 0.71 0.61097
Target:  5'- gACGAGcgccggGCCUaCGCGCGcCUCCggacccuccugCGCGACa -3'
miRNA:   3'- -UGCUCa-----UGGA-GUGCGC-GAGG-----------GCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 47327 0.7 0.640557
Target:  5'- -gGGGUGCC---CG-GCUCCCGCGGCg -3'
miRNA:   3'- ugCUCAUGGaguGCgCGAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 121954 0.7 0.640557
Target:  5'- uCGAGcGCCUgGaGCGCUCCgUGCGGCu -3'
miRNA:   3'- uGCUCaUGGAgUgCGCGAGG-GCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 130502 0.7 0.650417
Target:  5'- aGCGAGUgcGCCUCgcccacucgaGCGgGCUgaCCGUGACg -3'
miRNA:   3'- -UGCUCA--UGGAG----------UGCgCGAg-GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 114815 0.7 0.660263
Target:  5'- -gGAG-GCC-CGCGCGCUCuCCgGCGGCc -3'
miRNA:   3'- ugCUCaUGGaGUGCGCGAG-GG-CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 57319 0.7 0.670088
Target:  5'- cCGAGUACCUgcaGCGCG-UCCUGCuGCa -3'
miRNA:   3'- uGCUCAUGGAg--UGCGCgAGGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 62138 0.69 0.679884
Target:  5'- cACGGcgACCUCgacGCGCGCUUCUGCGuCu -3'
miRNA:   3'- -UGCUcaUGGAG---UGCGCGAGGGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 102040 0.69 0.689644
Target:  5'- cCGAGccggcguuCCUCGCGCGCUUCUucgagccggGCGACc -3'
miRNA:   3'- uGCUCau------GGAGUGCGCGAGGG---------CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 154341 0.69 0.689644
Target:  5'- cCGGGUGCCgcggC-CGaGCUCCCGCG-Cg -3'
miRNA:   3'- uGCUCAUGGa---GuGCgCGAGGGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 12312 0.69 0.69936
Target:  5'- cGCGGGacuCCUC-CGCGgUCCgCGUGACc -3'
miRNA:   3'- -UGCUCau-GGAGuGCGCgAGG-GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.