miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 3' -58.7 NC_002794.1 + 144892 0.67 0.82614
Target:  5'- gGCGAG-ACgCUCGCGcCGCUgggcCCCGCcGCc -3'
miRNA:   3'- -UGCUCaUG-GAGUGC-GCGA----GGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 31 0.67 0.82614
Target:  5'- aACGAG-GCCgcCGCGgGCUCUCG-GACg -3'
miRNA:   3'- -UGCUCaUGGa-GUGCgCGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 190187 0.67 0.82614
Target:  5'- cGCGcc-ACCUcCACGCGCUCCaGCGcCg -3'
miRNA:   3'- -UGCucaUGGA-GUGCGCGAGGgCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 63070 0.67 0.821216
Target:  5'- gGCGAgcuccugggccggcuGUACUUCAgCGCGCUgCCGCa-- -3'
miRNA:   3'- -UGCU---------------CAUGGAGU-GCGCGAgGGCGcug -5'
10827 3' -58.7 NC_002794.1 + 156850 0.67 0.817901
Target:  5'- uCG-GUGCC--GCGCGUUCCCGCucgaGGCg -3'
miRNA:   3'- uGCuCAUGGagUGCGCGAGGGCG----CUG- -5'
10827 3' -58.7 NC_002794.1 + 120094 0.67 0.817901
Target:  5'- gACGAccGUGCCgagcgcgcCGCGCGUgacgCgCGCGACg -3'
miRNA:   3'- -UGCU--CAUGGa-------GUGCGCGa---GgGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 96387 0.67 0.809506
Target:  5'- aGCGAGUggauggucgcGCCUUACcgGCGCUUCuucgaucucggCGCGGCg -3'
miRNA:   3'- -UGCUCA----------UGGAGUG--CGCGAGG-----------GCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 45394 0.67 0.809506
Target:  5'- cACGGGcACCUCGCGCucgugaaaucGCcCCCGCa-- -3'
miRNA:   3'- -UGCUCaUGGAGUGCG----------CGaGGGCGcug -5'
10827 3' -58.7 NC_002794.1 + 178838 0.67 0.800961
Target:  5'- cGCGGGU--CUCGCGUGC-CCCG-GACc -3'
miRNA:   3'- -UGCUCAugGAGUGCGCGaGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 12650 0.67 0.792274
Target:  5'- gACGGGUACCgCAC-CGCcacgcuggugaUCCCGCG-Cu -3'
miRNA:   3'- -UGCUCAUGGaGUGcGCG-----------AGGGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 104597 0.67 0.792274
Target:  5'- cACGAGUGCaggAUGCGCUCgCGCaGCu -3'
miRNA:   3'- -UGCUCAUGgagUGCGCGAGgGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 141140 0.67 0.792274
Target:  5'- cCGAGUcGCCgaaGCcgGCGgaUCCCGCGACg -3'
miRNA:   3'- uGCUCA-UGGag-UG--CGCg-AGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 68897 0.67 0.792274
Target:  5'- cACGGcUACCgaUCGCGuCGCggggCUCGCGGCg -3'
miRNA:   3'- -UGCUcAUGG--AGUGC-GCGa---GGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 69727 0.67 0.783453
Target:  5'- uCGAGUGCCgccggaGCGCcacggCCgGCGACg -3'
miRNA:   3'- uGCUCAUGGagug--CGCGa----GGgCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 40838 0.67 0.783453
Target:  5'- uGCGccUGCCgaccuCGCGCUCCCaGCGAUu -3'
miRNA:   3'- -UGCucAUGGagu--GCGCGAGGG-CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 153044 0.67 0.783453
Target:  5'- cGCGGGUcCCUCGgGCGgacggUCCCcgaGCGACg -3'
miRNA:   3'- -UGCUCAuGGAGUgCGCg----AGGG---CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 99269 0.67 0.783453
Target:  5'- uCGGGggcuCCg-GCGCGCUCCCG-GGCu -3'
miRNA:   3'- uGCUCau--GGagUGCGCGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 140912 0.68 0.774505
Target:  5'- gGCGGG-ACCUgcagGCGCGCUgCCUGCGcACc -3'
miRNA:   3'- -UGCUCaUGGAg---UGCGCGA-GGGCGC-UG- -5'
10827 3' -58.7 NC_002794.1 + 156980 0.68 0.766351
Target:  5'- cACGcGUGCCUCuauguaagguccuaGCGggCCCGCGGCc -3'
miRNA:   3'- -UGCuCAUGGAGug------------CGCgaGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 82789 0.68 0.76544
Target:  5'- cCGAccGCCgcgucCACGCGCgccgcgaCCCGCGGCu -3'
miRNA:   3'- uGCUcaUGGa----GUGCGCGa------GGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.