miRNA display CGI


Results 41 - 60 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 3' -58.7 NC_002794.1 + 82789 0.68 0.76544
Target:  5'- cCGAccGCCgcgucCACGCGCgccgcgaCCCGCGGCu -3'
miRNA:   3'- uGCUcaUGGa----GUGCGCGa------GGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 72154 0.68 0.76544
Target:  5'- cCGAGUACgCgcaCACGCGCUgCCGguaGGCc -3'
miRNA:   3'- uGCUCAUG-Ga--GUGCGCGAgGGCg--CUG- -5'
10827 3' -58.7 NC_002794.1 + 47891 0.68 0.76544
Target:  5'- -aGAGgcucAgCUCGCGCGgUCCCGCacGACc -3'
miRNA:   3'- ugCUCa---UgGAGUGCGCgAGGGCG--CUG- -5'
10827 3' -58.7 NC_002794.1 + 40122 0.68 0.76544
Target:  5'- cGCGAGaGCggagagcCACGgGCUCuCCGCGGCu -3'
miRNA:   3'- -UGCUCaUGga-----GUGCgCGAG-GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 152556 0.68 0.76544
Target:  5'- -aGAGUGCCaggaGCgGCGCUUcaccgCCGCGGCg -3'
miRNA:   3'- ugCUCAUGGag--UG-CGCGAG-----GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 34646 0.68 0.756264
Target:  5'- gACGAGcaugGCCUaCGCGCGCagCCGgcuCGACc -3'
miRNA:   3'- -UGCUCa---UGGA-GUGCGCGagGGC---GCUG- -5'
10827 3' -58.7 NC_002794.1 + 899 0.68 0.756264
Target:  5'- cCGGGUGCCa-ACGcCGCUCcCCGCGcCu -3'
miRNA:   3'- uGCUCAUGGagUGC-GCGAG-GGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 845 0.68 0.755341
Target:  5'- gGCGcGUGCgUUcggcccaGCGCGCgCCCGCGAg -3'
miRNA:   3'- -UGCuCAUGgAG-------UGCGCGaGGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 47969 0.68 0.746986
Target:  5'- cUGGGcgACCgcCGCGCGCUCCUcCGACc -3'
miRNA:   3'- uGCUCa-UGGa-GUGCGCGAGGGcGCUG- -5'
10827 3' -58.7 NC_002794.1 + 21951 0.68 0.737615
Target:  5'- uCGAagGCCgUCgGC-CGCUCCCGCGGCg -3'
miRNA:   3'- uGCUcaUGG-AG-UGcGCGAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 49796 0.68 0.737615
Target:  5'- cACGAGccgaGCCagGaGCaGCUCCCGCGGCc -3'
miRNA:   3'- -UGCUCa---UGGagUgCG-CGAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 44354 0.68 0.728158
Target:  5'- gGCGAG-ACCgagagcgcggCGgGCGCgacgUCCGCGACg -3'
miRNA:   3'- -UGCUCaUGGa---------GUgCGCGa---GGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 80631 0.68 0.728158
Target:  5'- cCGAGcACCUCGCGaccgGCgaCCCGCaGACg -3'
miRNA:   3'- uGCUCaUGGAGUGCg---CGa-GGGCG-CUG- -5'
10827 3' -58.7 NC_002794.1 + 141682 0.69 0.718625
Target:  5'- gACGGGUcGCCgUACGCGgUCCCGUcguGGCc -3'
miRNA:   3'- -UGCUCA-UGGaGUGCGCgAGGGCG---CUG- -5'
10827 3' -58.7 NC_002794.1 + 78401 0.69 0.718625
Target:  5'- gACGAG-GCCUCGcCGCGaCUCuCCGCucccGGCg -3'
miRNA:   3'- -UGCUCaUGGAGU-GCGC-GAG-GGCG----CUG- -5'
10827 3' -58.7 NC_002794.1 + 192653 0.69 0.718625
Target:  5'- -----cGCCgcCGCGCGCUCgCGCGACu -3'
miRNA:   3'- ugcucaUGGa-GUGCGCGAGgGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 191947 0.69 0.718625
Target:  5'- gGCGAGU-CCUCcgACG-GCUCCUcCGACg -3'
miRNA:   3'- -UGCUCAuGGAG--UGCgCGAGGGcGCUG- -5'
10827 3' -58.7 NC_002794.1 + 90267 0.69 0.709023
Target:  5'- cGCGAGUGguUUUCGCGCGCgcggucgagCUCGcCGACg -3'
miRNA:   3'- -UGCUCAU--GGAGUGCGCGa--------GGGC-GCUG- -5'
10827 3' -58.7 NC_002794.1 + 189136 0.69 0.709023
Target:  5'- uGCGGG-GCCgccaGCGCcagacuCUCCCGCGGCa -3'
miRNA:   3'- -UGCUCaUGGag--UGCGc-----GAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 12312 0.69 0.69936
Target:  5'- cGCGGGacuCCUC-CGCGgUCCgCGUGACc -3'
miRNA:   3'- -UGCUCau-GGAGuGCGCgAGG-GCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.