miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 3' -58.7 NC_002794.1 + 31 0.67 0.82614
Target:  5'- aACGAG-GCCgcCGCGgGCUCUCG-GACg -3'
miRNA:   3'- -UGCUCaUGGa-GUGCgCGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 845 0.68 0.755341
Target:  5'- gGCGcGUGCgUUcggcccaGCGCGCgCCCGCGAg -3'
miRNA:   3'- -UGCuCAUGgAG-------UGCGCGaGGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 899 0.68 0.756264
Target:  5'- cCGGGUGCCa-ACGcCGCUCcCCGCGcCu -3'
miRNA:   3'- uGCUCAUGGagUGC-GCGAG-GGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 12312 0.69 0.69936
Target:  5'- cGCGGGacuCCUC-CGCGgUCCgCGUGACc -3'
miRNA:   3'- -UGCUCau-GGAGuGCGCgAGG-GCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 12359 0.66 0.834214
Target:  5'- cGCGucacGUACCUCgGCGUGCUCgccugCCGCG-Cu -3'
miRNA:   3'- -UGCu---CAUGGAG-UGCGCGAG-----GGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 12650 0.67 0.792274
Target:  5'- gACGGGUACCgCAC-CGCcacgcuggugaUCCCGCG-Cu -3'
miRNA:   3'- -UGCUCAUGGaGUGcGCG-----------AGGGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 15296 0.71 0.581514
Target:  5'- cGCGAGcgACuaCUCGCGCGCccaUCCCGCagguGACg -3'
miRNA:   3'- -UGCUCa-UG--GAGUGCGCG---AGGGCG----CUG- -5'
10827 3' -58.7 NC_002794.1 + 21951 0.68 0.737615
Target:  5'- uCGAagGCCgUCgGC-CGCUCCCGCGGCg -3'
miRNA:   3'- uGCUcaUGG-AG-UGcGCGAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 34646 0.68 0.756264
Target:  5'- gACGAGcaugGCCUaCGCGCGCagCCGgcuCGACc -3'
miRNA:   3'- -UGCUCa---UGGA-GUGCGCGagGGC---GCUG- -5'
10827 3' -58.7 NC_002794.1 + 36360 0.66 0.849845
Target:  5'- cGCGGccACCgggUGCGCgCCCGCGGCg -3'
miRNA:   3'- -UGCUcaUGGaguGCGCGaGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 40122 0.68 0.76544
Target:  5'- cGCGAGaGCggagagcCACGgGCUCuCCGCGGCu -3'
miRNA:   3'- -UGCUCaUGga-----GUGCgCGAG-GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 40838 0.67 0.783453
Target:  5'- uGCGccUGCCgaccuCGCGCUCCCaGCGAUu -3'
miRNA:   3'- -UGCucAUGGagu--GCGCGAGGG-CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 44354 0.68 0.728158
Target:  5'- gGCGAG-ACCgagagcgcggCGgGCGCgacgUCCGCGACg -3'
miRNA:   3'- -UGCUCaUGGa---------GUgCGCGa---GGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 45394 0.67 0.809506
Target:  5'- cACGGGcACCUCGCGCucgugaaaucGCcCCCGCa-- -3'
miRNA:   3'- -UGCUCaUGGAGUGCG----------CGaGGGCGcug -5'
10827 3' -58.7 NC_002794.1 + 47327 0.7 0.640557
Target:  5'- -gGGGUGCC---CG-GCUCCCGCGGCg -3'
miRNA:   3'- ugCUCAUGGaguGCgCGAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 47891 0.68 0.76544
Target:  5'- -aGAGgcucAgCUCGCGCGgUCCCGCacGACc -3'
miRNA:   3'- ugCUCa---UgGAGUGCGCgAGGGCG--CUG- -5'
10827 3' -58.7 NC_002794.1 + 47969 0.68 0.746986
Target:  5'- cUGGGcgACCgcCGCGCGCUCCUcCGACc -3'
miRNA:   3'- uGCUCa-UGGa-GUGCGCGAGGGcGCUG- -5'
10827 3' -58.7 NC_002794.1 + 49796 0.68 0.737615
Target:  5'- cACGAGccgaGCCagGaGCaGCUCCCGCGGCc -3'
miRNA:   3'- -UGCUCa---UGGagUgCG-CGAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 57319 0.7 0.670088
Target:  5'- cCGAGUACCUgcaGCGCG-UCCUGCuGCa -3'
miRNA:   3'- uGCUCAUGGAg--UGCGCgAGGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 60450 1.09 0.002383
Target:  5'- gACGAGUACCUCACGCGCUCCCGCGACu -3'
miRNA:   3'- -UGCUCAUGGAGUGCGCGAGGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.