Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 60961 | 0.71 | 0.61097 |
Target: 5'- gACGAGcgccggGCCUaCGCGCGcCUCCggacccuccugCGCGACa -3' miRNA: 3'- -UGCUCa-----UGGA-GUGCGC-GAGG-----------GCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 62138 | 0.69 | 0.679884 |
Target: 5'- cACGGcgACCUCgacGCGCGCUUCUGCGuCu -3' miRNA: 3'- -UGCUcaUGGAG---UGCGCGAGGGCGCuG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 63070 | 0.67 | 0.821216 |
Target: 5'- gGCGAgcuccugggccggcuGUACUUCAgCGCGCUgCCGCa-- -3' miRNA: 3'- -UGCU---------------CAUGGAGU-GCGCGAgGGCGcug -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 63939 | 0.67 | 0.82614 |
Target: 5'- gGCGAGUcucgaguccgacGCCUCGcCGCGCgCCCgaaucaccgccGUGACc -3' miRNA: 3'- -UGCUCA------------UGGAGU-GCGCGaGGG-----------CGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 68897 | 0.67 | 0.792274 |
Target: 5'- cACGGcUACCgaUCGCGuCGCggggCUCGCGGCg -3' miRNA: 3'- -UGCUcAUGG--AGUGC-GCGa---GGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 69727 | 0.67 | 0.783453 |
Target: 5'- uCGAGUGCCgccggaGCGCcacggCCgGCGACg -3' miRNA: 3'- uGCUCAUGGagug--CGCGa----GGgCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 71573 | 0.66 | 0.857388 |
Target: 5'- gGCGAu--CCgguaCACGCGCUUCCacuGCGGCu -3' miRNA: 3'- -UGCUcauGGa---GUGCGCGAGGG---CGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 71814 | 0.66 | 0.854393 |
Target: 5'- gGCGAGgccGCCUCGuCGCGaggaucgccgucCCCGuCGACg -3' miRNA: 3'- -UGCUCa--UGGAGU-GCGCga----------GGGC-GCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 72154 | 0.68 | 0.76544 |
Target: 5'- cCGAGUACgCgcaCACGCGCUgCCGguaGGCc -3' miRNA: 3'- uGCUCAUG-Ga--GUGCGCGAgGGCg--CUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 72452 | 0.66 | 0.857388 |
Target: 5'- gGCG-GcGCCcCGCGCccgGC-CCCGCGGCg -3' miRNA: 3'- -UGCuCaUGGaGUGCG---CGaGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 72728 | 0.76 | 0.329822 |
Target: 5'- cAUGAcgGCC-C-CGCGCUCCCGCGGCg -3' miRNA: 3'- -UGCUcaUGGaGuGCGCGAGGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 75208 | 0.66 | 0.871901 |
Target: 5'- cCGAGUcGCgaCAUGuCGUUCCUGCGAg -3' miRNA: 3'- uGCUCA-UGgaGUGC-GCGAGGGCGCUg -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 78401 | 0.69 | 0.718625 |
Target: 5'- gACGAG-GCCUCGcCGCGaCUCuCCGCucccGGCg -3' miRNA: 3'- -UGCUCaUGGAGU-GCGC-GAG-GGCG----CUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 80631 | 0.68 | 0.728158 |
Target: 5'- cCGAGcACCUCGCGaccgGCgaCCCGCaGACg -3' miRNA: 3'- uGCUCaUGGAGUGCg---CGa-GGGCG-CUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 81791 | 0.66 | 0.834214 |
Target: 5'- cGCGAGauuuccgcUGCCUCAgcCGCGCgcaccgcaUCCCGCa-- -3' miRNA: 3'- -UGCUC--------AUGGAGU--GCGCG--------AGGGCGcug -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 82789 | 0.68 | 0.76544 |
Target: 5'- cCGAccGCCgcgucCACGCGCgccgcgaCCCGCGGCu -3' miRNA: 3'- uGCUcaUGGa----GUGCGCGa------GGGCGCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 85037 | 0.71 | 0.598179 |
Target: 5'- uCGGGUGCCUCGggccCGCGCUCgacgaccggccacgCCGCGuCu -3' miRNA: 3'- uGCUCAUGGAGU----GCGCGAG--------------GGCGCuG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 87832 | 0.66 | 0.857388 |
Target: 5'- uGCGcGUAUC-CGCGCGCauauaCCCGCG-Cg -3' miRNA: 3'- -UGCuCAUGGaGUGCGCGa----GGGCGCuG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 90267 | 0.69 | 0.709023 |
Target: 5'- cGCGAGUGguUUUCGCGCGCgcggucgagCUCGcCGACg -3' miRNA: 3'- -UGCUCAU--GGAGUGCGCGa--------GGGC-GCUG- -5' |
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10827 | 3' | -58.7 | NC_002794.1 | + | 96387 | 0.67 | 0.809506 |
Target: 5'- aGCGAGUggauggucgcGCCUUACcgGCGCUUCuucgaucucggCGCGGCg -3' miRNA: 3'- -UGCUCA----------UGGAGUG--CGCGAGG-----------GCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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