Results 41 - 60 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 99269 | 0.67 | 0.783453 |
Target: 5'- uCGGGggcuCCg-GCGCGCUCCCG-GGCu -3' miRNA: 3'- uGCUCau--GGagUGCGCGAGGGCgCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 102040 | 0.69 | 0.689644 |
Target: 5'- cCGAGccggcguuCCUCGCGCGCUUCUucgagccggGCGACc -3' miRNA: 3'- uGCUCau------GGAGUGCGCGAGGG---------CGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 102189 | 0.67 | 0.82614 |
Target: 5'- gGCGAGgACCUgGCG-GC-CgCCGUGACg -3' miRNA: 3'- -UGCUCaUGGAgUGCgCGaG-GGCGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 104597 | 0.67 | 0.792274 |
Target: 5'- cACGAGUGCaggAUGCGCUCgCGCaGCu -3' miRNA: 3'- -UGCUCAUGgagUGCGCGAGgGCGcUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 113857 | 0.71 | 0.601128 |
Target: 5'- gGCGugcAGUuccgGCCagGCGCGCUCggCCGCGGCg -3' miRNA: 3'- -UGC---UCA----UGGagUGCGCGAG--GGCGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 114815 | 0.7 | 0.660263 |
Target: 5'- -gGAG-GCC-CGCGCGCUCuCCgGCGGCc -3' miRNA: 3'- ugCUCaUGGaGUGCGCGAG-GG-CGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 120094 | 0.67 | 0.817901 |
Target: 5'- gACGAccGUGCCgagcgcgcCGCGCGUgacgCgCGCGACg -3' miRNA: 3'- -UGCU--CAUGGa-------GUGCGCGa---GgGCGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 121954 | 0.7 | 0.640557 |
Target: 5'- uCGAGcGCCUgGaGCGCUCCgUGCGGCu -3' miRNA: 3'- uGCUCaUGGAgUgCGCGAGG-GCGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 124921 | 0.66 | 0.864742 |
Target: 5'- gGCGAGU-CCUCgguGCGCGUggaCCuCGACu -3' miRNA: 3'- -UGCUCAuGGAG---UGCGCGag-GGcGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 130502 | 0.7 | 0.650417 |
Target: 5'- aGCGAGUgcGCCUCgcccacucgaGCGgGCUgaCCGUGACg -3' miRNA: 3'- -UGCUCA--UGGAG----------UGCgCGAg-GGCGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 140912 | 0.68 | 0.774505 |
Target: 5'- gGCGGG-ACCUgcagGCGCGCUgCCUGCGcACc -3' miRNA: 3'- -UGCUCaUGGAg---UGCGCGA-GGGCGC-UG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 141140 | 0.67 | 0.792274 |
Target: 5'- cCGAGUcGCCgaaGCcgGCGgaUCCCGCGACg -3' miRNA: 3'- uGCUCA-UGGag-UG--CGCg-AGGGCGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 141682 | 0.69 | 0.718625 |
Target: 5'- gACGGGUcGCCgUACGCGgUCCCGUcguGGCc -3' miRNA: 3'- -UGCUCA-UGGaGUGCGCgAGGGCG---CUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 144439 | 0.66 | 0.849845 |
Target: 5'- cCGAGUGCagccgUGCGCGCaCCugCGCGACu -3' miRNA: 3'- uGCUCAUGga---GUGCGCGaGG--GCGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 144892 | 0.67 | 0.82614 |
Target: 5'- gGCGAG-ACgCUCGCGcCGCUgggcCCCGCcGCc -3' miRNA: 3'- -UGCUCaUG-GAGUGC-GCGA----GGGCGcUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 145533 | 0.72 | 0.53317 |
Target: 5'- cCGAGcGCCUCGgGCGC-CCCgaGCGGCc -3' miRNA: 3'- uGCUCaUGGAGUgCGCGaGGG--CGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 150366 | 0.66 | 0.842118 |
Target: 5'- cCGAGaACCUC-CGCgucuuucuacGCUCCCG-GGCg -3' miRNA: 3'- uGCUCaUGGAGuGCG----------CGAGGGCgCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 150450 | 0.66 | 0.862556 |
Target: 5'- gGCGGGUgcggaucccggaagGCucccgguucuggCUCACGUGCaCCUGCGGCg -3' miRNA: 3'- -UGCUCA--------------UG------------GAGUGCGCGaGGGCGCUG- -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 150636 | 0.66 | 0.865466 |
Target: 5'- aGCcAGUAUCccggCACGCGCgucgaccugggcuggCCCGCGAa -3' miRNA: 3'- -UGcUCAUGGa---GUGCGCGa--------------GGGCGCUg -5' |
|||||||
10827 | 3' | -58.7 | NC_002794.1 | + | 151744 | 0.67 | 0.82614 |
Target: 5'- cGCcGGUcGCCUCGCGCGCUCguCCuCGAg -3' miRNA: 3'- -UGcUCA-UGGAGUGCGCGAG--GGcGCUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home