miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 3' -58.7 NC_002794.1 + 192653 0.69 0.718625
Target:  5'- -----cGCCgcCGCGCGCUCgCGCGACu -3'
miRNA:   3'- ugcucaUGGa-GUGCGCGAGgGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 191947 0.69 0.718625
Target:  5'- gGCGAGU-CCUCcgACG-GCUCCUcCGACg -3'
miRNA:   3'- -UGCUCAuGGAG--UGCgCGAGGGcGCUG- -5'
10827 3' -58.7 NC_002794.1 + 191527 0.66 0.864742
Target:  5'- gGCGucgGCC-CGCGC-CUCCCGCcGCa -3'
miRNA:   3'- -UGCucaUGGaGUGCGcGAGGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 190648 0.68 0.76544
Target:  5'- gGCGuGUGCaggaUCACGuCGCgCCCGCcGCg -3'
miRNA:   3'- -UGCuCAUGg---AGUGC-GCGaGGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 190580 0.72 0.543697
Target:  5'- aACGGGUAgCUCuCGCGCcgcagcuccuccaggUCCGCGACa -3'
miRNA:   3'- -UGCUCAUgGAGuGCGCGa--------------GGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 190187 0.67 0.82614
Target:  5'- cGCGcc-ACCUcCACGCGCUCCaGCGcCg -3'
miRNA:   3'- -UGCucaUGGA-GUGCGCGAGGgCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 189136 0.69 0.709023
Target:  5'- uGCGGG-GCCgccaGCGCcagacuCUCCCGCGGCa -3'
miRNA:   3'- -UGCUCaUGGag--UGCGc-----GAGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 188555 0.66 0.864742
Target:  5'- gGCGGGUACUgcugccgCACGUGCcgacacaacgCCCGCcGCu -3'
miRNA:   3'- -UGCUCAUGGa------GUGCGCGa---------GGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 185338 0.66 0.871901
Target:  5'- cGCGucgACCgcUCGCGCGC-CgCCGCGAg -3'
miRNA:   3'- -UGCucaUGG--AGUGCGCGaG-GGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 184559 0.74 0.40745
Target:  5'- uCGGacGCCUCACGCGC-CgCCGCGGCg -3'
miRNA:   3'- uGCUcaUGGAGUGCGCGaG-GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 183007 0.72 0.504852
Target:  5'- cGCGGGcGCCcCGCGCGCgCCCGCcGCc -3'
miRNA:   3'- -UGCUCaUGGaGUGCGCGaGGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 181238 0.66 0.834214
Target:  5'- gGCGAcGgcgcGCCUuccacCGCGCGUgCCCGCGAa -3'
miRNA:   3'- -UGCU-Ca---UGGA-----GUGCGCGaGGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 178912 0.75 0.375051
Target:  5'- uGCGGGUucGCCUCgGCGUGUUCCUGuCGGCu -3'
miRNA:   3'- -UGCUCA--UGGAG-UGCGCGAGGGC-GCUG- -5'
10827 3' -58.7 NC_002794.1 + 178838 0.67 0.800961
Target:  5'- cGCGGGU--CUCGCGUGC-CCCG-GACc -3'
miRNA:   3'- -UGCUCAugGAGUGCGCGaGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 156980 0.68 0.766351
Target:  5'- cACGcGUGCCUCuauguaagguccuaGCGggCCCGCGGCc -3'
miRNA:   3'- -UGCuCAUGGAGug------------CGCgaGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 156850 0.67 0.817901
Target:  5'- uCG-GUGCC--GCGCGUUCCCGCucgaGGCg -3'
miRNA:   3'- uGCuCAUGGagUGCGCGAGGGCG----CUG- -5'
10827 3' -58.7 NC_002794.1 + 154341 0.69 0.689644
Target:  5'- cCGGGUGCCgcggC-CGaGCUCCCGCG-Cg -3'
miRNA:   3'- uGCUCAUGGa---GuGCgCGAGGGCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 153044 0.67 0.783453
Target:  5'- cGCGGGUcCCUCGgGCGgacggUCCCcgaGCGACg -3'
miRNA:   3'- -UGCUCAuGGAGUgCGCg----AGGG---CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 152556 0.68 0.76544
Target:  5'- -aGAGUGCCaggaGCgGCGCUUcaccgCCGCGGCg -3'
miRNA:   3'- ugCUCAUGGag--UG-CGCGAG-----GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 151744 0.67 0.82614
Target:  5'- cGCcGGUcGCCUCGCGCGCUCguCCuCGAg -3'
miRNA:   3'- -UGcUCA-UGGAGUGCGCGAG--GGcGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.