miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 3' -58.7 NC_002794.1 + 150636 0.66 0.865466
Target:  5'- aGCcAGUAUCccggCACGCGCgucgaccugggcuggCCCGCGAa -3'
miRNA:   3'- -UGcUCAUGGa---GUGCGCGa--------------GGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 150450 0.66 0.862556
Target:  5'- gGCGGGUgcggaucccggaagGCucccgguucuggCUCACGUGCaCCUGCGGCg -3'
miRNA:   3'- -UGCUCA--------------UG------------GAGUGCGCGaGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 150366 0.66 0.842118
Target:  5'- cCGAGaACCUC-CGCgucuuucuacGCUCCCG-GGCg -3'
miRNA:   3'- uGCUCaUGGAGuGCG----------CGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 145533 0.72 0.53317
Target:  5'- cCGAGcGCCUCGgGCGC-CCCgaGCGGCc -3'
miRNA:   3'- uGCUCaUGGAGUgCGCGaGGG--CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 144892 0.67 0.82614
Target:  5'- gGCGAG-ACgCUCGCGcCGCUgggcCCCGCcGCc -3'
miRNA:   3'- -UGCUCaUG-GAGUGC-GCGA----GGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 144439 0.66 0.849845
Target:  5'- cCGAGUGCagccgUGCGCGCaCCugCGCGACu -3'
miRNA:   3'- uGCUCAUGga---GUGCGCGaGG--GCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 141682 0.69 0.718625
Target:  5'- gACGGGUcGCCgUACGCGgUCCCGUcguGGCc -3'
miRNA:   3'- -UGCUCA-UGGaGUGCGCgAGGGCG---CUG- -5'
10827 3' -58.7 NC_002794.1 + 141140 0.67 0.792274
Target:  5'- cCGAGUcGCCgaaGCcgGCGgaUCCCGCGACg -3'
miRNA:   3'- uGCUCA-UGGag-UG--CGCg-AGGGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 140912 0.68 0.774505
Target:  5'- gGCGGG-ACCUgcagGCGCGCUgCCUGCGcACc -3'
miRNA:   3'- -UGCUCaUGGAg---UGCGCGA-GGGCGC-UG- -5'
10827 3' -58.7 NC_002794.1 + 130502 0.7 0.650417
Target:  5'- aGCGAGUgcGCCUCgcccacucgaGCGgGCUgaCCGUGACg -3'
miRNA:   3'- -UGCUCA--UGGAG----------UGCgCGAg-GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 124921 0.66 0.864742
Target:  5'- gGCGAGU-CCUCgguGCGCGUggaCCuCGACu -3'
miRNA:   3'- -UGCUCAuGGAG---UGCGCGag-GGcGCUG- -5'
10827 3' -58.7 NC_002794.1 + 121954 0.7 0.640557
Target:  5'- uCGAGcGCCUgGaGCGCUCCgUGCGGCu -3'
miRNA:   3'- uGCUCaUGGAgUgCGCGAGG-GCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 120094 0.67 0.817901
Target:  5'- gACGAccGUGCCgagcgcgcCGCGCGUgacgCgCGCGACg -3'
miRNA:   3'- -UGCU--CAUGGa-------GUGCGCGa---GgGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 114815 0.7 0.660263
Target:  5'- -gGAG-GCC-CGCGCGCUCuCCgGCGGCc -3'
miRNA:   3'- ugCUCaUGGaGUGCGCGAG-GG-CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 113857 0.71 0.601128
Target:  5'- gGCGugcAGUuccgGCCagGCGCGCUCggCCGCGGCg -3'
miRNA:   3'- -UGC---UCA----UGGagUGCGCGAG--GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 104597 0.67 0.792274
Target:  5'- cACGAGUGCaggAUGCGCUCgCGCaGCu -3'
miRNA:   3'- -UGCUCAUGgagUGCGCGAGgGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 102189 0.67 0.82614
Target:  5'- gGCGAGgACCUgGCG-GC-CgCCGUGACg -3'
miRNA:   3'- -UGCUCaUGGAgUGCgCGaG-GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 102040 0.69 0.689644
Target:  5'- cCGAGccggcguuCCUCGCGCGCUUCUucgagccggGCGACc -3'
miRNA:   3'- uGCUCau------GGAGUGCGCGAGGG---------CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 99269 0.67 0.783453
Target:  5'- uCGGGggcuCCg-GCGCGCUCCCG-GGCu -3'
miRNA:   3'- uGCUCau--GGagUGCGCGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 96387 0.67 0.809506
Target:  5'- aGCGAGUggauggucgcGCCUUACcgGCGCUUCuucgaucucggCGCGGCg -3'
miRNA:   3'- -UGCUCA----------UGGAGUG--CGCGAGG-----------GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.