miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 3' -58.7 NC_002794.1 + 124921 0.66 0.864742
Target:  5'- gGCGAGU-CCUCgguGCGCGUggaCCuCGACu -3'
miRNA:   3'- -UGCUCAuGGAG---UGCGCGag-GGcGCUG- -5'
10827 3' -58.7 NC_002794.1 + 188555 0.66 0.864742
Target:  5'- gGCGGGUACUgcugccgCACGUGCcgacacaacgCCCGCcGCu -3'
miRNA:   3'- -UGCUCAUGGa------GUGCGCGa---------GGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 75208 0.66 0.871901
Target:  5'- cCGAGUcGCgaCAUGuCGUUCCUGCGAg -3'
miRNA:   3'- uGCUCA-UGgaGUGC-GCGAGGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 150636 0.66 0.865466
Target:  5'- aGCcAGUAUCccggCACGCGCgucgaccugggcuggCCCGCGAa -3'
miRNA:   3'- -UGcUCAUGGa---GUGCGCGa--------------GGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 191527 0.66 0.864742
Target:  5'- gGCGucgGCC-CGCGC-CUCCCGCcGCa -3'
miRNA:   3'- -UGCucaUGGaGUGCGcGAGGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 181238 0.66 0.834214
Target:  5'- gGCGAcGgcgcGCCUuccacCGCGCGUgCCCGCGAa -3'
miRNA:   3'- -UGCU-Ca---UGGA-----GUGCGCGaGGGCGCUg -5'
10827 3' -58.7 NC_002794.1 + 150366 0.66 0.842118
Target:  5'- cCGAGaACCUC-CGCgucuuucuacGCUCCCG-GGCg -3'
miRNA:   3'- uGCUCaUGGAGuGCG----------CGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 178838 0.67 0.800961
Target:  5'- cGCGGGU--CUCGCGUGC-CCCG-GACc -3'
miRNA:   3'- -UGCUCAugGAGUGCGCGaGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 120094 0.67 0.817901
Target:  5'- gACGAccGUGCCgagcgcgcCGCGCGUgacgCgCGCGACg -3'
miRNA:   3'- -UGCU--CAUGGa-------GUGCGCGa---GgGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 96387 0.67 0.809506
Target:  5'- aGCGAGUggauggucgcGCCUUACcgGCGCUUCuucgaucucggCGCGGCg -3'
miRNA:   3'- -UGCUCA----------UGGAGUG--CGCGAGG-----------GCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 45394 0.67 0.809506
Target:  5'- cACGGGcACCUCGCGCucgugaaaucGCcCCCGCa-- -3'
miRNA:   3'- -UGCUCaUGGAGUGCG----------CGaGGGCGcug -5'
10827 3' -58.7 NC_002794.1 + 156850 0.67 0.817901
Target:  5'- uCG-GUGCC--GCGCGUUCCCGCucgaGGCg -3'
miRNA:   3'- uGCuCAUGGagUGCGCGAGGGCG----CUG- -5'
10827 3' -58.7 NC_002794.1 + 63070 0.67 0.821216
Target:  5'- gGCGAgcuccugggccggcuGUACUUCAgCGCGCUgCCGCa-- -3'
miRNA:   3'- -UGCU---------------CAUGGAGU-GCGCGAgGGCGcug -5'
10827 3' -58.7 NC_002794.1 + 151744 0.67 0.82614
Target:  5'- cGCcGGUcGCCUCGCGCGCUCguCCuCGAg -3'
miRNA:   3'- -UGcUCA-UGGAGUGCGCGAG--GGcGCUg -5'
10827 3' -58.7 NC_002794.1 + 102189 0.67 0.82614
Target:  5'- gGCGAGgACCUgGCG-GC-CgCCGUGACg -3'
miRNA:   3'- -UGCUCaUGGAgUGCgCGaG-GGCGCUG- -5'
10827 3' -58.7 NC_002794.1 + 63939 0.67 0.82614
Target:  5'- gGCGAGUcucgaguccgacGCCUCGcCGCGCgCCCgaaucaccgccGUGACc -3'
miRNA:   3'- -UGCUCA------------UGGAGU-GCGCGaGGG-----------CGCUG- -5'
10827 3' -58.7 NC_002794.1 + 144892 0.67 0.82614
Target:  5'- gGCGAG-ACgCUCGCGcCGCUgggcCCCGCcGCc -3'
miRNA:   3'- -UGCUCaUG-GAGUGC-GCGA----GGGCGcUG- -5'
10827 3' -58.7 NC_002794.1 + 31 0.67 0.82614
Target:  5'- aACGAG-GCCgcCGCGgGCUCUCG-GACg -3'
miRNA:   3'- -UGCUCaUGGa-GUGCgCGAGGGCgCUG- -5'
10827 3' -58.7 NC_002794.1 + 190187 0.67 0.82614
Target:  5'- cGCGcc-ACCUcCACGCGCUCCaGCGcCg -3'
miRNA:   3'- -UGCucaUGGA-GUGCGCGAGGgCGCuG- -5'
10827 3' -58.7 NC_002794.1 + 12359 0.66 0.834214
Target:  5'- cGCGucacGUACCUCgGCGUGCUCgccugCCGCG-Cu -3'
miRNA:   3'- -UGCu---CAUGGAG-UGCGCGAG-----GGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.