miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 5' -52.2 NC_002794.1 + 133927 0.66 0.995781
Target:  5'- gGCGGCcgcgcccguccaguuGCGGGGugaCCGGaaccuacaACGUCUGCu -3'
miRNA:   3'- -CGCUG---------------UGCCUCua-GGUCa-------UGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 142766 0.66 0.995519
Target:  5'- gGUGugACGGAagacGAUCUcGUACGgcgCgUGCa -3'
miRNA:   3'- -CGCugUGCCU----CUAGGuCAUGCa--G-ACG- -5'
10827 5' -52.2 NC_002794.1 + 40122 0.66 0.995519
Target:  5'- cGCGAgaGCGGAGAgccacgggcucUCCGcgGCuUCUGCg -3'
miRNA:   3'- -CGCUg-UGCCUCU-----------AGGUcaUGcAGACG- -5'
10827 5' -52.2 NC_002794.1 + 94448 0.66 0.995519
Target:  5'- aCGGCGCGGAGGagUCGGUgGCGaCgGCa -3'
miRNA:   3'- cGCUGUGCCUCUa-GGUCA-UGCaGaCG- -5'
10827 5' -52.2 NC_002794.1 + 10771 0.66 0.995519
Target:  5'- gGCGGCGUGGAGcUgCAGUGCGcCaucGCg -3'
miRNA:   3'- -CGCUGUGCCUCuAgGUCAUGCaGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 31056 0.66 0.995519
Target:  5'- aGCGGCACGGcGG-CCAGcucgcgcagcACGUCgaGCg -3'
miRNA:   3'- -CGCUGUGCCuCUaGGUCa---------UGCAGa-CG- -5'
10827 5' -52.2 NC_002794.1 + 115287 0.66 0.994805
Target:  5'- -gGACACGGGGAaCgGGgacCG-CUGCg -3'
miRNA:   3'- cgCUGUGCCUCUaGgUCau-GCaGACG- -5'
10827 5' -52.2 NC_002794.1 + 47419 0.66 0.994805
Target:  5'- gGCGccgucGCGCGGAGcgCCAG-GCGUUUc- -3'
miRNA:   3'- -CGC-----UGUGCCUCuaGGUCaUGCAGAcg -5'
10827 5' -52.2 NC_002794.1 + 140319 0.66 0.994001
Target:  5'- gGCGGC-UGGAGAagUCCuugGCGUCucUGCc -3'
miRNA:   3'- -CGCUGuGCCUCU--AGGucaUGCAG--ACG- -5'
10827 5' -52.2 NC_002794.1 + 147323 0.66 0.994001
Target:  5'- uGCGGCucuuCGGGgccGAUCUcGUGCGccgCUGCc -3'
miRNA:   3'- -CGCUGu---GCCU---CUAGGuCAUGCa--GACG- -5'
10827 5' -52.2 NC_002794.1 + 194837 0.66 0.994001
Target:  5'- cGCGGCcCGGcGucUCCAGccgcacCGUCUGCc -3'
miRNA:   3'- -CGCUGuGCCuCu-AGGUCau----GCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 83273 0.66 0.9931
Target:  5'- cGUG-CACGGAcuccaGAUCCAccccgaagauccGUACGUC-GCg -3'
miRNA:   3'- -CGCuGUGCCU-----CUAGGU------------CAUGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 36928 0.66 0.9931
Target:  5'- cGCGAcCGCGGAGGagaaAGUccGCGUCgcgcgGCg -3'
miRNA:   3'- -CGCU-GUGCCUCUagg-UCA--UGCAGa----CG- -5'
10827 5' -52.2 NC_002794.1 + 148810 0.66 0.9931
Target:  5'- aGC-ACGCGGAGAUCUGGa--GaCUGCc -3'
miRNA:   3'- -CGcUGUGCCUCUAGGUCaugCaGACG- -5'
10827 5' -52.2 NC_002794.1 + 111423 0.66 0.992094
Target:  5'- -aGGCGCGGAGccgCCAGaucgGCaGUCgggGCg -3'
miRNA:   3'- cgCUGUGCCUCua-GGUCa---UG-CAGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 50604 0.66 0.992094
Target:  5'- gGCGcCGgGGGGAUCgAG-ACGagCUGCu -3'
miRNA:   3'- -CGCuGUgCCUCUAGgUCaUGCa-GACG- -5'
10827 5' -52.2 NC_002794.1 + 158311 0.66 0.992094
Target:  5'- uGCGAUACGcGuGGGUCgCAuaauaggcGUACuGUCUGCg -3'
miRNA:   3'- -CGCUGUGC-C-UCUAG-GU--------CAUG-CAGACG- -5'
10827 5' -52.2 NC_002794.1 + 122196 0.67 0.990975
Target:  5'- uGCGACGCGGcGAagCGGUGCcg--GCg -3'
miRNA:   3'- -CGCUGUGCCuCUagGUCAUGcagaCG- -5'
10827 5' -52.2 NC_002794.1 + 19535 0.67 0.990975
Target:  5'- cGCGGCGCGGcccgCCGGUGuCGgacccggaCUGCu -3'
miRNA:   3'- -CGCUGUGCCucuaGGUCAU-GCa-------GACG- -5'
10827 5' -52.2 NC_002794.1 + 124017 0.67 0.989736
Target:  5'- gGCGGcCGCGGaAGAgaCGGUGgcCGUCUGUc -3'
miRNA:   3'- -CGCU-GUGCC-UCUagGUCAU--GCAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.