miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 5' -52.2 NC_002794.1 + 60486 1.15 0.004222
Target:  5'- gGCGACACGGAGAUCCAGUACGUCUGCg -3'
miRNA:   3'- -CGCUGUGCCUCUAGGUCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 111881 0.75 0.760469
Target:  5'- aGCG-CGCGGugaccuGAUCCAGgGCGaUCUGCc -3'
miRNA:   3'- -CGCuGUGCCu-----CUAGGUCaUGC-AGACG- -5'
10827 5' -52.2 NC_002794.1 + 94797 0.74 0.814193
Target:  5'- aGCGGCACGGGGAUggcagcgcuacuaCCGGcGgGUgCUGCg -3'
miRNA:   3'- -CGCUGUGCCUCUA-------------GGUCaUgCA-GACG- -5'
10827 5' -52.2 NC_002794.1 + 157516 0.73 0.848272
Target:  5'- gGCGgacGCGCuGGGGAUCCAGUugG-CgGCu -3'
miRNA:   3'- -CGC---UGUG-CCUCUAGGUCAugCaGaCG- -5'
10827 5' -52.2 NC_002794.1 + 78331 0.72 0.863739
Target:  5'- cGCGACggGCGGAGGcgCCGGaAUGUCgGCc -3'
miRNA:   3'- -CGCUG--UGCCUCUa-GGUCaUGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 62093 0.72 0.892143
Target:  5'- gGCGACGCGGcGcgCCGG-ACgGUCUGg -3'
miRNA:   3'- -CGCUGUGCCuCuaGGUCaUG-CAGACg -5'
10827 5' -52.2 NC_002794.1 + 115860 0.71 0.911088
Target:  5'- uGgGACGCGcgaGGGGUCCGGgGCGUCcgggGCg -3'
miRNA:   3'- -CgCUGUGC---CUCUAGGUCaUGCAGa---CG- -5'
10827 5' -52.2 NC_002794.1 + 112179 0.71 0.916936
Target:  5'- cGCGGCcaGCaGGuuGUCgaGGUACGUCUGCc -3'
miRNA:   3'- -CGCUG--UG-CCucUAGg-UCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 137388 0.71 0.927395
Target:  5'- cCGACGCGGG--UCCGGUcuguccgGCGUCcGCg -3'
miRNA:   3'- cGCUGUGCCUcuAGGUCA-------UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 120736 0.71 0.927922
Target:  5'- -gGGCACGGcGGUCCGGgaGCGcagacUCUGCu -3'
miRNA:   3'- cgCUGUGCCuCUAGGUCa-UGC-----AGACG- -5'
10827 5' -52.2 NC_002794.1 + 86938 0.71 0.927922
Target:  5'- gGCGGgGCGG-GAUCCGGcgagcgucgACGUCcGCu -3'
miRNA:   3'- -CGCUgUGCCuCUAGGUCa--------UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 100491 0.7 0.942623
Target:  5'- aCGACGUGGucauucAGAUCUcGUGCGUCUGUu -3'
miRNA:   3'- cGCUGUGCC------UCUAGGuCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 176725 0.7 0.947053
Target:  5'- aCGGCGucUGGAGAUgcgaCCuGUGgGUCUGCg -3'
miRNA:   3'- cGCUGU--GCCUCUA----GGuCAUgCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 192287 0.7 0.951251
Target:  5'- cGCGACcCGGAGA-CCAGcuucgcgcuCGUCcGCg -3'
miRNA:   3'- -CGCUGuGCCUCUaGGUCau-------GCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 139114 0.7 0.951251
Target:  5'- aCGACGCGGGcGAUCaCGGagacgGCGUC-GCg -3'
miRNA:   3'- cGCUGUGCCU-CUAG-GUCa----UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 133132 0.7 0.951251
Target:  5'- uGCGACgGCGaGAGAUC--GUGCGagaUCUGCg -3'
miRNA:   3'- -CGCUG-UGC-CUCUAGguCAUGC---AGACG- -5'
10827 5' -52.2 NC_002794.1 + 14641 0.69 0.955221
Target:  5'- -gGGCACGGAGAcgCCGGcgccgcgGCGUCgGUc -3'
miRNA:   3'- cgCUGUGCCUCUa-GGUCa------UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 102451 0.69 0.955221
Target:  5'- aGCuGACGCucgaGGAGAUgCGGcGCGUCgGCg -3'
miRNA:   3'- -CG-CUGUG----CCUCUAgGUCaUGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 147777 0.69 0.965796
Target:  5'- aGCGACGCGGcGAcCCuGgGCGUCUcggaGCu -3'
miRNA:   3'- -CGCUGUGCCuCUaGGuCaUGCAGA----CG- -5'
10827 5' -52.2 NC_002794.1 + 114635 0.68 0.971784
Target:  5'- uCGGCGCGGAGcucgagcugCCGGUGCuGUUcGCg -3'
miRNA:   3'- cGCUGUGCCUCua-------GGUCAUG-CAGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.