miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 5' -52.2 NC_002794.1 + 124017 0.67 0.989736
Target:  5'- gGCGGcCGCGGaAGAgaCGGUGgcCGUCUGUc -3'
miRNA:   3'- -CGCU-GUGCC-UCUagGUCAU--GCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 119514 0.67 0.989736
Target:  5'- gGCGGCGCGGAGccggCCGcGgaccccuCGUCcGCg -3'
miRNA:   3'- -CGCUGUGCCUCua--GGU-Cau-----GCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 113613 0.67 0.988366
Target:  5'- aGCGcCGCGGccAGGUUCAGguugaACGUCUcgaGCa -3'
miRNA:   3'- -CGCuGUGCC--UCUAGGUCa----UGCAGA---CG- -5'
10827 5' -52.2 NC_002794.1 + 110636 0.67 0.988222
Target:  5'- cGCGGCgGCGG-GGUCgGGUuucuccgGCGgCUGCa -3'
miRNA:   3'- -CGCUG-UGCCuCUAGgUCA-------UGCaGACG- -5'
10827 5' -52.2 NC_002794.1 + 172204 0.67 0.98686
Target:  5'- cGCGAUGCGuauGAGAgcaaCGGUGCGUggGCa -3'
miRNA:   3'- -CGCUGUGC---CUCUag--GUCAUGCAgaCG- -5'
10827 5' -52.2 NC_002794.1 + 70198 0.67 0.985207
Target:  5'- gGUGGaGCGGAGAUCCAGcucgcccggACgGUCggGCg -3'
miRNA:   3'- -CGCUgUGCCUCUAGGUCa--------UG-CAGa-CG- -5'
10827 5' -52.2 NC_002794.1 + 107884 0.67 0.985207
Target:  5'- gGCGGCGCGGcGGGUgCGGcUGCcggGUCUGa -3'
miRNA:   3'- -CGCUGUGCC-UCUAgGUC-AUG---CAGACg -5'
10827 5' -52.2 NC_002794.1 + 157385 0.67 0.985207
Target:  5'- aGCGgu-CGGAuGUaCguGUACGUCUGCa -3'
miRNA:   3'- -CGCuguGCCUcUA-GguCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 14724 0.68 0.983401
Target:  5'- cGCGGCuuCGGcucgGGGUCCGGcGCGUCa-- -3'
miRNA:   3'- -CGCUGu-GCC----UCUAGGUCaUGCAGacg -5'
10827 5' -52.2 NC_002794.1 + 113547 0.68 0.981432
Target:  5'- cCGGCcCGGAGcaggcgCCGGacCGUCUGCg -3'
miRNA:   3'- cGCUGuGCCUCua----GGUCauGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 128239 0.68 0.981432
Target:  5'- cCGugACGGAGA--CGGU-CGUCUGg -3'
miRNA:   3'- cGCugUGCCUCUagGUCAuGCAGACg -5'
10827 5' -52.2 NC_002794.1 + 11269 0.68 0.981432
Target:  5'- gGCGACGCGGucacCUGGUggcGCGUCcGCa -3'
miRNA:   3'- -CGCUGUGCCucuaGGUCA---UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 93011 0.68 0.981432
Target:  5'- cGCGACguggugcaGCGGcGGAacCCGGUGCGcggCUGCc -3'
miRNA:   3'- -CGCUG--------UGCC-UCUa-GGUCAUGCa--GACG- -5'
10827 5' -52.2 NC_002794.1 + 30989 0.68 0.979294
Target:  5'- gGCGACgGCGGGGucuucgCCGG-ACGUCgccGCc -3'
miRNA:   3'- -CGCUG-UGCCUCua----GGUCaUGCAGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 113403 0.68 0.979294
Target:  5'- uGCaGCAccCGGAGcugGUCCAGcACGUCgGCg -3'
miRNA:   3'- -CGcUGU--GCCUC---UAGGUCaUGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 138964 0.68 0.974477
Target:  5'- uGCGACGCGGcGGA-CgGGUugGcCUGg -3'
miRNA:   3'- -CGCUGUGCC-UCUaGgUCAugCaGACg -5'
10827 5' -52.2 NC_002794.1 + 18698 0.68 0.974477
Target:  5'- cCGGCACGGcggcggcGGUCCGG-ACGUCggaGCc -3'
miRNA:   3'- cGCUGUGCCu------CUAGGUCaUGCAGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 142386 0.68 0.974477
Target:  5'- aGCGGCggagACGGcGGUgCAGgcgGCGUCgGCg -3'
miRNA:   3'- -CGCUG----UGCCuCUAgGUCa--UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 114635 0.68 0.971784
Target:  5'- uCGGCGCGGAGcucgagcugCCGGUGCuGUUcGCg -3'
miRNA:   3'- cGCUGUGCCUCua-------GGUCAUG-CAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 147777 0.69 0.965796
Target:  5'- aGCGACGCGGcGAcCCuGgGCGUCUcggaGCu -3'
miRNA:   3'- -CGCUGUGCCuCUaGGuCaUGCAGA----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.