miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 5' -52.2 NC_002794.1 + 10771 0.66 0.995519
Target:  5'- gGCGGCGUGGAGcUgCAGUGCGcCaucGCg -3'
miRNA:   3'- -CGCUGUGCCUCuAgGUCAUGCaGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 11269 0.68 0.981432
Target:  5'- gGCGACGCGGucacCUGGUggcGCGUCcGCa -3'
miRNA:   3'- -CGCUGUGCCucuaGGUCA---UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 14641 0.69 0.955221
Target:  5'- -gGGCACGGAGAcgCCGGcgccgcgGCGUCgGUc -3'
miRNA:   3'- cgCUGUGCCUCUa-GGUCa------UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 14724 0.68 0.983401
Target:  5'- cGCGGCuuCGGcucgGGGUCCGGcGCGUCa-- -3'
miRNA:   3'- -CGCUGu-GCC----UCUAGGUCaUGCAGacg -5'
10827 5' -52.2 NC_002794.1 + 18698 0.68 0.974477
Target:  5'- cCGGCACGGcggcggcGGUCCGG-ACGUCggaGCc -3'
miRNA:   3'- cGCUGUGCCu------CUAGGUCaUGCAGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 19535 0.67 0.990975
Target:  5'- cGCGGCGCGGcccgCCGGUGuCGgacccggaCUGCu -3'
miRNA:   3'- -CGCUGUGCCucuaGGUCAU-GCa-------GACG- -5'
10827 5' -52.2 NC_002794.1 + 30989 0.68 0.979294
Target:  5'- gGCGACgGCGGGGucuucgCCGG-ACGUCgccGCc -3'
miRNA:   3'- -CGCUG-UGCCUCua----GGUCaUGCAGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 31056 0.66 0.995519
Target:  5'- aGCGGCACGGcGG-CCAGcucgcgcagcACGUCgaGCg -3'
miRNA:   3'- -CGCUGUGCCuCUaGGUCa---------UGCAGa-CG- -5'
10827 5' -52.2 NC_002794.1 + 36928 0.66 0.9931
Target:  5'- cGCGAcCGCGGAGGagaaAGUccGCGUCgcgcgGCg -3'
miRNA:   3'- -CGCU-GUGCCUCUagg-UCA--UGCAGa----CG- -5'
10827 5' -52.2 NC_002794.1 + 40122 0.66 0.995519
Target:  5'- cGCGAgaGCGGAGAgccacgggcucUCCGcgGCuUCUGCg -3'
miRNA:   3'- -CGCUg-UGCCUCU-----------AGGUcaUGcAGACG- -5'
10827 5' -52.2 NC_002794.1 + 47419 0.66 0.994805
Target:  5'- gGCGccgucGCGCGGAGcgCCAG-GCGUUUc- -3'
miRNA:   3'- -CGC-----UGUGCCUCuaGGUCaUGCAGAcg -5'
10827 5' -52.2 NC_002794.1 + 50604 0.66 0.992094
Target:  5'- gGCGcCGgGGGGAUCgAG-ACGagCUGCu -3'
miRNA:   3'- -CGCuGUgCCUCUAGgUCaUGCa-GACG- -5'
10827 5' -52.2 NC_002794.1 + 60486 1.15 0.004222
Target:  5'- gGCGACACGGAGAUCCAGUACGUCUGCg -3'
miRNA:   3'- -CGCUGUGCCUCUAGGUCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 62093 0.72 0.892143
Target:  5'- gGCGACGCGGcGcgCCGG-ACgGUCUGg -3'
miRNA:   3'- -CGCUGUGCCuCuaGGUCaUG-CAGACg -5'
10827 5' -52.2 NC_002794.1 + 68480 0.67 0.989736
Target:  5'- uGgGGCACGGAGGcggCCGagccggccGUGCGggugaUCUGCc -3'
miRNA:   3'- -CgCUGUGCCUCUa--GGU--------CAUGC-----AGACG- -5'
10827 5' -52.2 NC_002794.1 + 70198 0.67 0.985207
Target:  5'- gGUGGaGCGGAGAUCCAGcucgcccggACgGUCggGCg -3'
miRNA:   3'- -CGCUgUGCCUCUAGGUCa--------UG-CAGa-CG- -5'
10827 5' -52.2 NC_002794.1 + 78331 0.72 0.863739
Target:  5'- cGCGACggGCGGAGGcgCCGGaAUGUCgGCc -3'
miRNA:   3'- -CGCUG--UGCCUCUa-GGUCaUGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 83273 0.66 0.9931
Target:  5'- cGUG-CACGGAcuccaGAUCCAccccgaagauccGUACGUC-GCg -3'
miRNA:   3'- -CGCuGUGCCU-----CUAGGU------------CAUGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 86938 0.71 0.927922
Target:  5'- gGCGGgGCGG-GAUCCGGcgagcgucgACGUCcGCu -3'
miRNA:   3'- -CGCUgUGCCuCUAGGUCa--------UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 93011 0.68 0.981432
Target:  5'- cGCGACguggugcaGCGGcGGAacCCGGUGCGcggCUGCc -3'
miRNA:   3'- -CGCUG--------UGCC-UCUa-GGUCAUGCa--GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.