miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 5' -52.2 NC_002794.1 + 94448 0.66 0.995519
Target:  5'- aCGGCGCGGAGGagUCGGUgGCGaCgGCa -3'
miRNA:   3'- cGCUGUGCCUCUa-GGUCA-UGCaGaCG- -5'
10827 5' -52.2 NC_002794.1 + 94797 0.74 0.814193
Target:  5'- aGCGGCACGGGGAUggcagcgcuacuaCCGGcGgGUgCUGCg -3'
miRNA:   3'- -CGCUGUGCCUCUA-------------GGUCaUgCA-GACG- -5'
10827 5' -52.2 NC_002794.1 + 100491 0.7 0.942623
Target:  5'- aCGACGUGGucauucAGAUCUcGUGCGUCUGUu -3'
miRNA:   3'- cGCUGUGCC------UCUAGGuCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 102451 0.69 0.955221
Target:  5'- aGCuGACGCucgaGGAGAUgCGGcGCGUCgGCg -3'
miRNA:   3'- -CG-CUGUG----CCUCUAgGUCaUGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 107884 0.67 0.985207
Target:  5'- gGCGGCGCGGcGGGUgCGGcUGCcggGUCUGa -3'
miRNA:   3'- -CGCUGUGCC-UCUAgGUC-AUG---CAGACg -5'
10827 5' -52.2 NC_002794.1 + 110636 0.67 0.988222
Target:  5'- cGCGGCgGCGG-GGUCgGGUuucuccgGCGgCUGCa -3'
miRNA:   3'- -CGCUG-UGCCuCUAGgUCA-------UGCaGACG- -5'
10827 5' -52.2 NC_002794.1 + 111423 0.66 0.992094
Target:  5'- -aGGCGCGGAGccgCCAGaucgGCaGUCgggGCg -3'
miRNA:   3'- cgCUGUGCCUCua-GGUCa---UG-CAGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 111881 0.75 0.760469
Target:  5'- aGCG-CGCGGugaccuGAUCCAGgGCGaUCUGCc -3'
miRNA:   3'- -CGCuGUGCCu-----CUAGGUCaUGC-AGACG- -5'
10827 5' -52.2 NC_002794.1 + 112179 0.71 0.916936
Target:  5'- cGCGGCcaGCaGGuuGUCgaGGUACGUCUGCc -3'
miRNA:   3'- -CGCUG--UG-CCucUAGg-UCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 113403 0.68 0.979294
Target:  5'- uGCaGCAccCGGAGcugGUCCAGcACGUCgGCg -3'
miRNA:   3'- -CGcUGU--GCCUC---UAGGUCaUGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 113547 0.68 0.981432
Target:  5'- cCGGCcCGGAGcaggcgCCGGacCGUCUGCg -3'
miRNA:   3'- cGCUGuGCCUCua----GGUCauGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 113613 0.67 0.988366
Target:  5'- aGCGcCGCGGccAGGUUCAGguugaACGUCUcgaGCa -3'
miRNA:   3'- -CGCuGUGCC--UCUAGGUCa----UGCAGA---CG- -5'
10827 5' -52.2 NC_002794.1 + 114635 0.68 0.971784
Target:  5'- uCGGCGCGGAGcucgagcugCCGGUGCuGUUcGCg -3'
miRNA:   3'- cGCUGUGCCUCua-------GGUCAUG-CAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 115287 0.66 0.994805
Target:  5'- -gGACACGGGGAaCgGGgacCG-CUGCg -3'
miRNA:   3'- cgCUGUGCCUCUaGgUCau-GCaGACG- -5'
10827 5' -52.2 NC_002794.1 + 115860 0.71 0.911088
Target:  5'- uGgGACGCGcgaGGGGUCCGGgGCGUCcgggGCg -3'
miRNA:   3'- -CgCUGUGC---CUCUAGGUCaUGCAGa---CG- -5'
10827 5' -52.2 NC_002794.1 + 119514 0.67 0.989736
Target:  5'- gGCGGCGCGGAGccggCCGcGgaccccuCGUCcGCg -3'
miRNA:   3'- -CGCUGUGCCUCua--GGU-Cau-----GCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 120736 0.71 0.927922
Target:  5'- -gGGCACGGcGGUCCGGgaGCGcagacUCUGCu -3'
miRNA:   3'- cgCUGUGCCuCUAGGUCa-UGC-----AGACG- -5'
10827 5' -52.2 NC_002794.1 + 122196 0.67 0.990975
Target:  5'- uGCGACGCGGcGAagCGGUGCcg--GCg -3'
miRNA:   3'- -CGCUGUGCCuCUagGUCAUGcagaCG- -5'
10827 5' -52.2 NC_002794.1 + 124017 0.67 0.989736
Target:  5'- gGCGGcCGCGGaAGAgaCGGUGgcCGUCUGUc -3'
miRNA:   3'- -CGCU-GUGCC-UCUagGUCAU--GCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 128239 0.68 0.981432
Target:  5'- cCGugACGGAGA--CGGU-CGUCUGg -3'
miRNA:   3'- cGCugUGCCUCUagGUCAuGCAGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.