Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10827 | 5' | -52.2 | NC_002794.1 | + | 133132 | 0.7 | 0.951251 |
Target: 5'- uGCGACgGCGaGAGAUC--GUGCGagaUCUGCg -3' miRNA: 3'- -CGCUG-UGC-CUCUAGguCAUGC---AGACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 133927 | 0.66 | 0.995781 |
Target: 5'- gGCGGCcgcgcccguccaguuGCGGGGugaCCGGaaccuacaACGUCUGCu -3' miRNA: 3'- -CGCUG---------------UGCCUCua-GGUCa-------UGCAGACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 137388 | 0.71 | 0.927395 |
Target: 5'- cCGACGCGGG--UCCGGUcuguccgGCGUCcGCg -3' miRNA: 3'- cGCUGUGCCUcuAGGUCA-------UGCAGaCG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 138964 | 0.68 | 0.974477 |
Target: 5'- uGCGACGCGGcGGA-CgGGUugGcCUGg -3' miRNA: 3'- -CGCUGUGCC-UCUaGgUCAugCaGACg -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 139114 | 0.7 | 0.951251 |
Target: 5'- aCGACGCGGGcGAUCaCGGagacgGCGUC-GCg -3' miRNA: 3'- cGCUGUGCCU-CUAG-GUCa----UGCAGaCG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 140319 | 0.66 | 0.994001 |
Target: 5'- gGCGGC-UGGAGAagUCCuugGCGUCucUGCc -3' miRNA: 3'- -CGCUGuGCCUCU--AGGucaUGCAG--ACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 142386 | 0.68 | 0.974477 |
Target: 5'- aGCGGCggagACGGcGGUgCAGgcgGCGUCgGCg -3' miRNA: 3'- -CGCUG----UGCCuCUAgGUCa--UGCAGaCG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 142766 | 0.66 | 0.995519 |
Target: 5'- gGUGugACGGAagacGAUCUcGUACGgcgCgUGCa -3' miRNA: 3'- -CGCugUGCCU----CUAGGuCAUGCa--G-ACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 147323 | 0.66 | 0.994001 |
Target: 5'- uGCGGCucuuCGGGgccGAUCUcGUGCGccgCUGCc -3' miRNA: 3'- -CGCUGu---GCCU---CUAGGuCAUGCa--GACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 147777 | 0.69 | 0.965796 |
Target: 5'- aGCGACGCGGcGAcCCuGgGCGUCUcggaGCu -3' miRNA: 3'- -CGCUGUGCCuCUaGGuCaUGCAGA----CG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 148810 | 0.66 | 0.9931 |
Target: 5'- aGC-ACGCGGAGAUCUGGa--GaCUGCc -3' miRNA: 3'- -CGcUGUGCCUCUAGGUCaugCaGACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 157385 | 0.67 | 0.985207 |
Target: 5'- aGCGgu-CGGAuGUaCguGUACGUCUGCa -3' miRNA: 3'- -CGCuguGCCUcUA-GguCAUGCAGACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 157516 | 0.73 | 0.848272 |
Target: 5'- gGCGgacGCGCuGGGGAUCCAGUugG-CgGCu -3' miRNA: 3'- -CGC---UGUG-CCUCUAGGUCAugCaGaCG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 158311 | 0.66 | 0.992094 |
Target: 5'- uGCGAUACGcGuGGGUCgCAuaauaggcGUACuGUCUGCg -3' miRNA: 3'- -CGCUGUGC-C-UCUAG-GU--------CAUG-CAGACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 172204 | 0.67 | 0.98686 |
Target: 5'- cGCGAUGCGuauGAGAgcaaCGGUGCGUggGCa -3' miRNA: 3'- -CGCUGUGC---CUCUag--GUCAUGCAgaCG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 176725 | 0.7 | 0.947053 |
Target: 5'- aCGGCGucUGGAGAUgcgaCCuGUGgGUCUGCg -3' miRNA: 3'- cGCUGU--GCCUCUA----GGuCAUgCAGACG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 192287 | 0.7 | 0.951251 |
Target: 5'- cGCGACcCGGAGA-CCAGcuucgcgcuCGUCcGCg -3' miRNA: 3'- -CGCUGuGCCUCUaGGUCau-------GCAGaCG- -5' |
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10827 | 5' | -52.2 | NC_002794.1 | + | 194837 | 0.66 | 0.994001 |
Target: 5'- cGCGGCcCGGcGucUCCAGccgcacCGUCUGCc -3' miRNA: 3'- -CGCUGuGCCuCu-AGGUCau----GCAGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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