miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 5' -52.2 NC_002794.1 + 194837 0.66 0.994001
Target:  5'- cGCGGCcCGGcGucUCCAGccgcacCGUCUGCc -3'
miRNA:   3'- -CGCUGuGCCuCu-AGGUCau----GCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 192287 0.7 0.951251
Target:  5'- cGCGACcCGGAGA-CCAGcuucgcgcuCGUCcGCg -3'
miRNA:   3'- -CGCUGuGCCUCUaGGUCau-------GCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 176725 0.7 0.947053
Target:  5'- aCGGCGucUGGAGAUgcgaCCuGUGgGUCUGCg -3'
miRNA:   3'- cGCUGU--GCCUCUA----GGuCAUgCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 172204 0.67 0.98686
Target:  5'- cGCGAUGCGuauGAGAgcaaCGGUGCGUggGCa -3'
miRNA:   3'- -CGCUGUGC---CUCUag--GUCAUGCAgaCG- -5'
10827 5' -52.2 NC_002794.1 + 158311 0.66 0.992094
Target:  5'- uGCGAUACGcGuGGGUCgCAuaauaggcGUACuGUCUGCg -3'
miRNA:   3'- -CGCUGUGC-C-UCUAG-GU--------CAUG-CAGACG- -5'
10827 5' -52.2 NC_002794.1 + 157516 0.73 0.848272
Target:  5'- gGCGgacGCGCuGGGGAUCCAGUugG-CgGCu -3'
miRNA:   3'- -CGC---UGUG-CCUCUAGGUCAugCaGaCG- -5'
10827 5' -52.2 NC_002794.1 + 157385 0.67 0.985207
Target:  5'- aGCGgu-CGGAuGUaCguGUACGUCUGCa -3'
miRNA:   3'- -CGCuguGCCUcUA-GguCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 148810 0.66 0.9931
Target:  5'- aGC-ACGCGGAGAUCUGGa--GaCUGCc -3'
miRNA:   3'- -CGcUGUGCCUCUAGGUCaugCaGACG- -5'
10827 5' -52.2 NC_002794.1 + 147777 0.69 0.965796
Target:  5'- aGCGACGCGGcGAcCCuGgGCGUCUcggaGCu -3'
miRNA:   3'- -CGCUGUGCCuCUaGGuCaUGCAGA----CG- -5'
10827 5' -52.2 NC_002794.1 + 147323 0.66 0.994001
Target:  5'- uGCGGCucuuCGGGgccGAUCUcGUGCGccgCUGCc -3'
miRNA:   3'- -CGCUGu---GCCU---CUAGGuCAUGCa--GACG- -5'
10827 5' -52.2 NC_002794.1 + 142766 0.66 0.995519
Target:  5'- gGUGugACGGAagacGAUCUcGUACGgcgCgUGCa -3'
miRNA:   3'- -CGCugUGCCU----CUAGGuCAUGCa--G-ACG- -5'
10827 5' -52.2 NC_002794.1 + 142386 0.68 0.974477
Target:  5'- aGCGGCggagACGGcGGUgCAGgcgGCGUCgGCg -3'
miRNA:   3'- -CGCUG----UGCCuCUAgGUCa--UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 140319 0.66 0.994001
Target:  5'- gGCGGC-UGGAGAagUCCuugGCGUCucUGCc -3'
miRNA:   3'- -CGCUGuGCCUCU--AGGucaUGCAG--ACG- -5'
10827 5' -52.2 NC_002794.1 + 139114 0.7 0.951251
Target:  5'- aCGACGCGGGcGAUCaCGGagacgGCGUC-GCg -3'
miRNA:   3'- cGCUGUGCCU-CUAG-GUCa----UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 138964 0.68 0.974477
Target:  5'- uGCGACGCGGcGGA-CgGGUugGcCUGg -3'
miRNA:   3'- -CGCUGUGCC-UCUaGgUCAugCaGACg -5'
10827 5' -52.2 NC_002794.1 + 137388 0.71 0.927395
Target:  5'- cCGACGCGGG--UCCGGUcuguccgGCGUCcGCg -3'
miRNA:   3'- cGCUGUGCCUcuAGGUCA-------UGCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 133927 0.66 0.995781
Target:  5'- gGCGGCcgcgcccguccaguuGCGGGGugaCCGGaaccuacaACGUCUGCu -3'
miRNA:   3'- -CGCUG---------------UGCCUCua-GGUCa-------UGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 133132 0.7 0.951251
Target:  5'- uGCGACgGCGaGAGAUC--GUGCGagaUCUGCg -3'
miRNA:   3'- -CGCUG-UGC-CUCUAGguCAUGC---AGACG- -5'
10827 5' -52.2 NC_002794.1 + 128239 0.68 0.981432
Target:  5'- cCGugACGGAGA--CGGU-CGUCUGg -3'
miRNA:   3'- cGCugUGCCUCUagGUCAuGCAGACg -5'
10827 5' -52.2 NC_002794.1 + 124017 0.67 0.989736
Target:  5'- gGCGGcCGCGGaAGAgaCGGUGgcCGUCUGUc -3'
miRNA:   3'- -CGCU-GUGCC-UCUagGUCAU--GCAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.