miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10827 5' -52.2 NC_002794.1 + 40122 0.66 0.995519
Target:  5'- cGCGAgaGCGGAGAgccacgggcucUCCGcgGCuUCUGCg -3'
miRNA:   3'- -CGCUg-UGCCUCU-----------AGGUcaUGcAGACG- -5'
10827 5' -52.2 NC_002794.1 + 142766 0.66 0.995519
Target:  5'- gGUGugACGGAagacGAUCUcGUACGgcgCgUGCa -3'
miRNA:   3'- -CGCugUGCCU----CUAGGuCAUGCa--G-ACG- -5'
10827 5' -52.2 NC_002794.1 + 158311 0.66 0.992094
Target:  5'- uGCGAUACGcGuGGGUCgCAuaauaggcGUACuGUCUGCg -3'
miRNA:   3'- -CGCUGUGC-C-UCUAG-GU--------CAUG-CAGACG- -5'
10827 5' -52.2 NC_002794.1 + 148810 0.66 0.9931
Target:  5'- aGC-ACGCGGAGAUCUGGa--GaCUGCc -3'
miRNA:   3'- -CGcUGUGCCUCUAGGUCaugCaGACG- -5'
10827 5' -52.2 NC_002794.1 + 50604 0.66 0.992094
Target:  5'- gGCGcCGgGGGGAUCgAG-ACGagCUGCu -3'
miRNA:   3'- -CGCuGUgCCUCUAGgUCaUGCa-GACG- -5'
10827 5' -52.2 NC_002794.1 + 70198 0.67 0.985207
Target:  5'- gGUGGaGCGGAGAUCCAGcucgcccggACgGUCggGCg -3'
miRNA:   3'- -CGCUgUGCCUCUAGGUCa--------UG-CAGa-CG- -5'
10827 5' -52.2 NC_002794.1 + 107884 0.67 0.985207
Target:  5'- gGCGGCGCGGcGGGUgCGGcUGCcggGUCUGa -3'
miRNA:   3'- -CGCUGUGCC-UCUAgGUC-AUG---CAGACg -5'
10827 5' -52.2 NC_002794.1 + 157385 0.67 0.985207
Target:  5'- aGCGgu-CGGAuGUaCguGUACGUCUGCa -3'
miRNA:   3'- -CGCuguGCCUcUA-GguCAUGCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 172204 0.67 0.98686
Target:  5'- cGCGAUGCGuauGAGAgcaaCGGUGCGUggGCa -3'
miRNA:   3'- -CGCUGUGC---CUCUag--GUCAUGCAgaCG- -5'
10827 5' -52.2 NC_002794.1 + 110636 0.67 0.988222
Target:  5'- cGCGGCgGCGG-GGUCgGGUuucuccgGCGgCUGCa -3'
miRNA:   3'- -CGCUG-UGCCuCUAGgUCA-------UGCaGACG- -5'
10827 5' -52.2 NC_002794.1 + 113613 0.67 0.988366
Target:  5'- aGCGcCGCGGccAGGUUCAGguugaACGUCUcgaGCa -3'
miRNA:   3'- -CGCuGUGCC--UCUAGGUCa----UGCAGA---CG- -5'
10827 5' -52.2 NC_002794.1 + 68480 0.67 0.989736
Target:  5'- uGgGGCACGGAGGcggCCGagccggccGUGCGggugaUCUGCc -3'
miRNA:   3'- -CgCUGUGCCUCUa--GGU--------CAUGC-----AGACG- -5'
10827 5' -52.2 NC_002794.1 + 124017 0.67 0.989736
Target:  5'- gGCGGcCGCGGaAGAgaCGGUGgcCGUCUGUc -3'
miRNA:   3'- -CGCU-GUGCC-UCUagGUCAU--GCAGACG- -5'
10827 5' -52.2 NC_002794.1 + 19535 0.67 0.990975
Target:  5'- cGCGGCGCGGcccgCCGGUGuCGgacccggaCUGCu -3'
miRNA:   3'- -CGCUGUGCCucuaGGUCAU-GCa-------GACG- -5'
10827 5' -52.2 NC_002794.1 + 119514 0.67 0.989736
Target:  5'- gGCGGCGCGGAGccggCCGcGgaccccuCGUCcGCg -3'
miRNA:   3'- -CGCUGUGCCUCua--GGU-Cau-----GCAGaCG- -5'
10827 5' -52.2 NC_002794.1 + 122196 0.67 0.990975
Target:  5'- uGCGACGCGGcGAagCGGUGCcg--GCg -3'
miRNA:   3'- -CGCUGUGCCuCUagGUCAUGcagaCG- -5'
10827 5' -52.2 NC_002794.1 + 111423 0.66 0.992094
Target:  5'- -aGGCGCGGAGccgCCAGaucgGCaGUCgggGCg -3'
miRNA:   3'- cgCUGUGCCUCua-GGUCa---UG-CAGa--CG- -5'
10827 5' -52.2 NC_002794.1 + 133927 0.66 0.995781
Target:  5'- gGCGGCcgcgcccguccaguuGCGGGGugaCCGGaaccuacaACGUCUGCu -3'
miRNA:   3'- -CGCUG---------------UGCCUCua-GGUCa-------UGCAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.