miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10828 3' -57.5 NC_002794.1 + 156031 0.66 0.916174
Target:  5'- cGCaGCCGUCgcgUCGcGCgacgGgGGCAGCCGUg -3'
miRNA:   3'- -CGcUGGCGG---AGC-CGa---UgUUGUCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 84054 0.66 0.916174
Target:  5'- aCGacGCCGCCUcccagcCGGagacgACGACcGCCGCg -3'
miRNA:   3'- cGC--UGGCGGA------GCCga---UGUUGuCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 95074 0.66 0.916174
Target:  5'- cUGACCuGUCUCcaguGCUACGAggagcUGGCCGCg -3'
miRNA:   3'- cGCUGG-CGGAGc---CGAUGUU-----GUCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 110431 0.66 0.916174
Target:  5'- gGCGGCUGUCgucgUCGGUgGCGGaGGCCGg -3'
miRNA:   3'- -CGCUGGCGG----AGCCGaUGUUgUCGGCg -5'
10828 3' -57.5 NC_002794.1 + 58311 0.66 0.916174
Target:  5'- -aGACCGCCgc-GCU-CuGCAcGCCGCg -3'
miRNA:   3'- cgCUGGCGGagcCGAuGuUGU-CGGCG- -5'
10828 3' -57.5 NC_002794.1 + 37428 0.66 0.916174
Target:  5'- aGCG-CCGUC-C-GCaGCAGCAGCaCGCa -3'
miRNA:   3'- -CGCuGGCGGaGcCGaUGUUGUCG-GCG- -5'
10828 3' -57.5 NC_002794.1 + 53528 0.66 0.916174
Target:  5'- -aGAa-GCCgUgGGC-GCGGCGGCCGCa -3'
miRNA:   3'- cgCUggCGG-AgCCGaUGUUGUCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 34859 0.66 0.916174
Target:  5'- aGCGGgCGCCgcgGGCgccGCGGacGCCGCg -3'
miRNA:   3'- -CGCUgGCGGag-CCGa--UGUUguCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 21658 0.66 0.916174
Target:  5'- aGCGGCgGCggUGGCgGCGGCGGUauuCGCc -3'
miRNA:   3'- -CGCUGgCGgaGCCGaUGUUGUCG---GCG- -5'
10828 3' -57.5 NC_002794.1 + 112336 0.66 0.916174
Target:  5'- aGCGcGCCgGCCggCGGCgccgGCGGCggggcggggAGCUGCu -3'
miRNA:   3'- -CGC-UGG-CGGa-GCCGa---UGUUG---------UCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 142403 0.66 0.916174
Target:  5'- uGCaGGCgGCgUCGGCgGCGcCGGgCGCg -3'
miRNA:   3'- -CG-CUGgCGgAGCCGaUGUuGUCgGCG- -5'
10828 3' -57.5 NC_002794.1 + 86826 0.66 0.916174
Target:  5'- cGCGACCucGCCgggaUCGGgU-CGGCGGCCccGCc -3'
miRNA:   3'- -CGCUGG--CGG----AGCCgAuGUUGUCGG--CG- -5'
10828 3' -57.5 NC_002794.1 + 123945 0.66 0.916174
Target:  5'- cGCGuACCGUCUgagcCGcGC-GCAGgAGCCGUa -3'
miRNA:   3'- -CGC-UGGCGGA----GC-CGaUGUUgUCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 36020 0.66 0.916174
Target:  5'- gGCGGaauCCGCCgucCGGCc----CGGCCGCc -3'
miRNA:   3'- -CGCU---GGCGGa--GCCGauguuGUCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 11784 0.66 0.916174
Target:  5'- cGgGAUCGCCgCGGUgucCGugGcGCCGCc -3'
miRNA:   3'- -CgCUGGCGGaGCCGau-GUugU-CGGCG- -5'
10828 3' -57.5 NC_002794.1 + 47476 0.66 0.916174
Target:  5'- cGCGACaGCCcggggUCGaGCUuCAcCAGCUGCc -3'
miRNA:   3'- -CGCUGgCGG-----AGC-CGAuGUuGUCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 187063 0.66 0.916174
Target:  5'- cGCGGCCcgccagguGCCgcaGGCUGCucgccacguggAACAGcCCGUc -3'
miRNA:   3'- -CGCUGG--------CGGag-CCGAUG-----------UUGUC-GGCG- -5'
10828 3' -57.5 NC_002794.1 + 185351 0.66 0.916174
Target:  5'- cGCGcGCCGCCgCGaGCggGCcgAAC-GCCGCg -3'
miRNA:   3'- -CGC-UGGCGGaGC-CGa-UG--UUGuCGGCG- -5'
10828 3' -57.5 NC_002794.1 + 125900 0.66 0.916174
Target:  5'- cUGGCCGuCCUCgccuGGCcGCGACucacGCUGCu -3'
miRNA:   3'- cGCUGGC-GGAG----CCGaUGUUGu---CGGCG- -5'
10828 3' -57.5 NC_002794.1 + 46154 0.66 0.915613
Target:  5'- uCGAUCGCCcucuggaUCGcGC-ACAGC-GCCGCc -3'
miRNA:   3'- cGCUGGCGG-------AGC-CGaUGUUGuCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.