miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10828 5' -54 NC_002794.1 + 191123 0.66 0.98017
Target:  5'- aCUGCGCCCAGUacagccccucgaagUCgucCAGCACcucgucguaccacgGcGAGGu -3'
miRNA:   3'- -GACGUGGGUCA--------------AGaa-GUCGUG--------------C-CUCC- -5'
10828 5' -54 NC_002794.1 + 115881 0.66 0.979294
Target:  5'- -gGCGUCCGGggCgUCcgcggAGCGCGGGGGg -3'
miRNA:   3'- gaCGUGGGUCaaGaAG-----UCGUGCCUCC- -5'
10828 5' -54 NC_002794.1 + 65393 0.66 0.976978
Target:  5'- cCU-CACCCGGUUUccgUCccucGCGCGGAGa -3'
miRNA:   3'- -GAcGUGGGUCAAGa--AGu---CGUGCCUCc -5'
10828 5' -54 NC_002794.1 + 113113 0.66 0.974477
Target:  5'- cCUGCACCUGGcgCUUCuccguGUcCGaGAGGa -3'
miRNA:   3'- -GACGUGGGUCaaGAAGu----CGuGC-CUCC- -5'
10828 5' -54 NC_002794.1 + 89981 0.66 0.974477
Target:  5'- gUGCGCcggcguucgaCCGGUgcgcacgaUCUUCGGgACGGAGa -3'
miRNA:   3'- gACGUG----------GGUCA--------AGAAGUCgUGCCUCc -5'
10828 5' -54 NC_002794.1 + 72260 0.66 0.974477
Target:  5'- uUGC-CCCAGUUCc---GCGCGGAa- -3'
miRNA:   3'- gACGuGGGUCAAGaaguCGUGCCUcc -5'
10828 5' -54 NC_002794.1 + 49120 0.66 0.971784
Target:  5'- cCUGCACCgGGac---CGGC-CGGAGGu -3'
miRNA:   3'- -GACGUGGgUCaagaaGUCGuGCCUCC- -5'
10828 5' -54 NC_002794.1 + 106367 0.66 0.971784
Target:  5'- -gGCG-CCGGUUC----GCGCGGAGGg -3'
miRNA:   3'- gaCGUgGGUCAAGaaguCGUGCCUCC- -5'
10828 5' -54 NC_002794.1 + 108311 0.66 0.971784
Target:  5'- uUGCGCCggCGGUgggUCUUggacggCGGCGCaGGAGGa -3'
miRNA:   3'- gACGUGG--GUCA---AGAA------GUCGUG-CCUCC- -5'
10828 5' -54 NC_002794.1 + 94780 0.66 0.968892
Target:  5'- -gGCGCUgggcgAGUUCgagCGGCACGGGGa -3'
miRNA:   3'- gaCGUGGg----UCAAGaa-GUCGUGCCUCc -5'
10828 5' -54 NC_002794.1 + 112111 0.66 0.968892
Target:  5'- -cGCGgCCGGgaCgaCGGCGCGGGGa -3'
miRNA:   3'- gaCGUgGGUCaaGaaGUCGUGCCUCc -5'
10828 5' -54 NC_002794.1 + 84905 0.67 0.965796
Target:  5'- -cGCugCCcaugGGUUCggaaccCGGCGCGGAGc -3'
miRNA:   3'- gaCGugGG----UCAAGaa----GUCGUGCCUCc -5'
10828 5' -54 NC_002794.1 + 57503 0.67 0.965475
Target:  5'- -cGCGCCCgccgccuacggcgAGUUCgugcUCAGCAaGGAGa -3'
miRNA:   3'- gaCGUGGG-------------UCAAGa---AGUCGUgCCUCc -5'
10828 5' -54 NC_002794.1 + 34487 0.67 0.963837
Target:  5'- gCUGCGCCgccaGGUgaccaaccagGGCGCGGAGGa -3'
miRNA:   3'- -GACGUGGg---UCAagaag-----UCGUGCCUCC- -5'
10828 5' -54 NC_002794.1 + 180887 0.67 0.951251
Target:  5'- -cGCGCCCGG-UC-UCGGCcGCGGAc- -3'
miRNA:   3'- gaCGUGGGUCaAGaAGUCG-UGCCUcc -5'
10828 5' -54 NC_002794.1 + 114621 0.67 0.947053
Target:  5'- -gGCGCagCAGgUCcUCGGCGCGGAGc -3'
miRNA:   3'- gaCGUGg-GUCaAGaAGUCGUGCCUCc -5'
10828 5' -54 NC_002794.1 + 23452 0.68 0.922548
Target:  5'- aUGUACguCCGGaUCgacgUCGGgGCGGAGGg -3'
miRNA:   3'- gACGUG--GGUCaAGa---AGUCgUGCCUCC- -5'
10828 5' -54 NC_002794.1 + 189254 0.68 0.921997
Target:  5'- -aGCgGCCCAGcgggaucaacaccUUCUcgCAGCACaGGAGGu -3'
miRNA:   3'- gaCG-UGGGUC-------------AAGAa-GUCGUG-CCUCC- -5'
10828 5' -54 NC_002794.1 + 60497 0.69 0.916936
Target:  5'- ---gAUCCAGUacgUCUgcgucgaCGGCACGGAGGg -3'
miRNA:   3'- gacgUGGGUCA---AGAa------GUCGUGCCUCC- -5'
10828 5' -54 NC_002794.1 + 113406 0.69 0.916936
Target:  5'- -aGCACCCGGagCUggucCAGCACGucGGc -3'
miRNA:   3'- gaCGUGGGUCaaGAa---GUCGUGCcuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.