miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 75287 0.66 0.899019
Target:  5'- cCGGCCGGCC--GGCgcCUcgCCAGCc -3'
miRNA:   3'- uGCCGGCUGGagUCGauGAa-GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 9017 0.66 0.899019
Target:  5'- gACGuGCaGACCaaCAGCUGCaaCCGGCUg -3'
miRNA:   3'- -UGC-CGgCUGGa-GUCGAUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 119631 0.66 0.899019
Target:  5'- uCGGCCGuCgUCAGCacgGCUUCgucgguCAGCg -3'
miRNA:   3'- uGCCGGCuGgAGUCGa--UGAAG------GUCGa -5'
10829 5' -57.4 NC_002794.1 + 59980 0.66 0.899019
Target:  5'- -aGGUCGACCgcuGGCUGCg-CCAGUUc -3'
miRNA:   3'- ugCCGGCUGGag-UCGAUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 42651 0.66 0.899019
Target:  5'- cGCGGCCGaaGCCgaCGGC-GCcgCCGGCa -3'
miRNA:   3'- -UGCCGGC--UGGa-GUCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 192010 0.66 0.899019
Target:  5'- aGCGGCggUGGCCgCGGCUGCUguuUCUguGGCg -3'
miRNA:   3'- -UGCCG--GCUGGaGUCGAUGA---AGG--UCGa -5'
10829 5' -57.4 NC_002794.1 + 68548 0.66 0.89257
Target:  5'- cGCGGCCGACa--AGCUGCgggugUCgccgaCGGCg -3'
miRNA:   3'- -UGCCGGCUGgagUCGAUGa----AG-----GUCGa -5'
10829 5' -57.4 NC_002794.1 + 127195 0.66 0.89257
Target:  5'- cGCGGCCGcaGCCgcagCAGCaGCcucaaccCCAGCa -3'
miRNA:   3'- -UGCCGGC--UGGa---GUCGaUGaa-----GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 42851 0.66 0.89257
Target:  5'- aGCGcCCGGCCUCGGCguacGCUUUCuggaAGCc -3'
miRNA:   3'- -UGCcGGCUGGAGUCGa---UGAAGG----UCGa -5'
10829 5' -57.4 NC_002794.1 + 49019 0.66 0.89257
Target:  5'- cGCGG-CGGCCgCGGCgucgUCCGGCg -3'
miRNA:   3'- -UGCCgGCUGGaGUCGaugaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 185003 0.66 0.891913
Target:  5'- gGCGGCCGcCCacgggacUCAGC-ACggugaCCAGCUc -3'
miRNA:   3'- -UGCCGGCuGG-------AGUCGaUGaa---GGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 68491 0.66 0.8859
Target:  5'- gGCGGCCGAgC-CGGCcgUGCgggugaucugCCAGCg -3'
miRNA:   3'- -UGCCGGCUgGaGUCG--AUGaa--------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 60348 0.66 0.8859
Target:  5'- cGCGaCCG-CCUCGGCUACaa-CAGCc -3'
miRNA:   3'- -UGCcGGCuGGAGUCGAUGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 142131 0.66 0.8859
Target:  5'- gGCGGCCGACCgccgggucaCGGCggagGCggcgguagcaCCGGCa -3'
miRNA:   3'- -UGCCGGCUGGa--------GUCGa---UGaa--------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 76845 0.66 0.8859
Target:  5'- uGCGcGCCGGCCUCGuCgGC--CCAGCUa -3'
miRNA:   3'- -UGC-CGGCUGGAGUcGaUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 83545 0.66 0.879013
Target:  5'- uCGGCCaGACCgUCAGUcugGCcgUCCGGUa -3'
miRNA:   3'- uGCCGG-CUGG-AGUCGa--UGa-AGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 62057 0.66 0.879013
Target:  5'- gUGGCCGACgC-CGGCgGCgacgCCGGCg -3'
miRNA:   3'- uGCCGGCUG-GaGUCGaUGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 143574 0.66 0.879013
Target:  5'- uGCGcGCCGuCCUCGGCggcGCUguggucgaacaCCGGCa -3'
miRNA:   3'- -UGC-CGGCuGGAGUCGa--UGAa----------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 99827 0.66 0.879013
Target:  5'- uCGGCCGACCU--GCU-CUUCCAc-- -3'
miRNA:   3'- uGCCGGCUGGAguCGAuGAAGGUcga -5'
10829 5' -57.4 NC_002794.1 + 101496 0.66 0.879013
Target:  5'- gGCGGCCGGuCCgagCGGUgcgGCacacgCCGGCg -3'
miRNA:   3'- -UGCCGGCU-GGa--GUCGa--UGaa---GGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.