Results 1 - 20 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 35455 | 0.66 | 0.871913 |
Target: 5'- uGCGGCUGAUCgcCAGCUGCcUCUAcCUg -3' miRNA: 3'- -UGCCGGCUGGa-GUCGAUGaAGGUcGA- -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 60348 | 0.66 | 0.8859 |
Target: 5'- cGCGaCCG-CCUCGGCUACaa-CAGCc -3' miRNA: 3'- -UGCcGGCuGGAGUCGAUGaagGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 142131 | 0.66 | 0.8859 |
Target: 5'- gGCGGCCGACCgccgggucaCGGCggagGCggcgguagcaCCGGCa -3' miRNA: 3'- -UGCCGGCUGGa--------GUCGa---UGaa--------GGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 101496 | 0.66 | 0.879013 |
Target: 5'- gGCGGCCGGuCCgagCGGUgcgGCacacgCCGGCg -3' miRNA: 3'- -UGCCGGCU-GGa--GUCGa--UGaa---GGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 76845 | 0.66 | 0.8859 |
Target: 5'- uGCGcGCCGGCCUCGuCgGC--CCAGCUa -3' miRNA: 3'- -UGC-CGGCUGGAGUcGaUGaaGGUCGA- -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 99827 | 0.66 | 0.879013 |
Target: 5'- uCGGCCGACCU--GCU-CUUCCAc-- -3' miRNA: 3'- uGCCGGCUGGAguCGAuGAAGGUcga -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 143574 | 0.66 | 0.879013 |
Target: 5'- uGCGcGCCGuCCUCGGCggcGCUguggucgaacaCCGGCa -3' miRNA: 3'- -UGC-CGGCuGGAGUCGa--UGAa----------GGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 62057 | 0.66 | 0.879013 |
Target: 5'- gUGGCCGACgC-CGGCgGCgacgCCGGCg -3' miRNA: 3'- uGCCGGCUG-GaGUCGaUGaa--GGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 83545 | 0.66 | 0.879013 |
Target: 5'- uCGGCCaGACCgUCAGUcugGCcgUCCGGUa -3' miRNA: 3'- uGCCGG-CUGG-AGUCGa--UGa-AGGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 68491 | 0.66 | 0.8859 |
Target: 5'- gGCGGCCGAgC-CGGCcgUGCgggugaucugCCAGCg -3' miRNA: 3'- -UGCCGGCUgGaGUCG--AUGaa--------GGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 185003 | 0.66 | 0.891913 |
Target: 5'- gGCGGCCGcCCacgggacUCAGC-ACggugaCCAGCUc -3' miRNA: 3'- -UGCCGGCuGG-------AGUCGaUGaa---GGUCGA- -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 49019 | 0.66 | 0.89257 |
Target: 5'- cGCGG-CGGCCgCGGCgucgUCCGGCg -3' miRNA: 3'- -UGCCgGCUGGaGUCGaugaAGGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 192010 | 0.66 | 0.899019 |
Target: 5'- aGCGGCggUGGCCgCGGCUGCUguuUCUguGGCg -3' miRNA: 3'- -UGCCG--GCUGGaGUCGAUGA---AGG--UCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 42651 | 0.66 | 0.899019 |
Target: 5'- cGCGGCCGaaGCCgaCGGC-GCcgCCGGCa -3' miRNA: 3'- -UGCCGGC--UGGa-GUCGaUGaaGGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 59980 | 0.66 | 0.899019 |
Target: 5'- -aGGUCGACCgcuGGCUGCg-CCAGUUc -3' miRNA: 3'- ugCCGGCUGGag-UCGAUGaaGGUCGA- -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 119631 | 0.66 | 0.899019 |
Target: 5'- uCGGCCGuCgUCAGCacgGCUUCgucgguCAGCg -3' miRNA: 3'- uGCCGGCuGgAGUCGa--UGAAG------GUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 9017 | 0.66 | 0.899019 |
Target: 5'- gACGuGCaGACCaaCAGCUGCaaCCGGCUg -3' miRNA: 3'- -UGC-CGgCUGGa-GUCGAUGaaGGUCGA- -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 68548 | 0.66 | 0.89257 |
Target: 5'- cGCGGCCGACa--AGCUGCgggugUCgccgaCGGCg -3' miRNA: 3'- -UGCCGGCUGgagUCGAUGa----AG-----GUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 127195 | 0.66 | 0.89257 |
Target: 5'- cGCGGCCGcaGCCgcagCAGCaGCcucaaccCCAGCa -3' miRNA: 3'- -UGCCGGC--UGGa---GUCGaUGaa-----GGUCGa -5' |
|||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 42851 | 0.66 | 0.89257 |
Target: 5'- aGCGcCCGGCCUCGGCguacGCUUUCuggaAGCc -3' miRNA: 3'- -UGCcGGCUGGAGUCGa---UGAAGG----UCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home