miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 119631 0.66 0.899019
Target:  5'- uCGGCCGuCgUCAGCacgGCUUCgucgguCAGCg -3'
miRNA:   3'- uGCCGGCuGgAGUCGa--UGAAG------GUCGa -5'
10829 5' -57.4 NC_002794.1 + 9017 0.66 0.899019
Target:  5'- gACGuGCaGACCaaCAGCUGCaaCCGGCUg -3'
miRNA:   3'- -UGC-CGgCUGGa-GUCGAUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 68548 0.66 0.89257
Target:  5'- cGCGGCCGACa--AGCUGCgggugUCgccgaCGGCg -3'
miRNA:   3'- -UGCCGGCUGgagUCGAUGa----AG-----GUCGa -5'
10829 5' -57.4 NC_002794.1 + 127195 0.66 0.89257
Target:  5'- cGCGGCCGcaGCCgcagCAGCaGCcucaaccCCAGCa -3'
miRNA:   3'- -UGCCGGC--UGGa---GUCGaUGaa-----GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 60348 0.66 0.8859
Target:  5'- cGCGaCCG-CCUCGGCUACaa-CAGCc -3'
miRNA:   3'- -UGCcGGCuGGAGUCGAUGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 68491 0.66 0.8859
Target:  5'- gGCGGCCGAgC-CGGCcgUGCgggugaucugCCAGCg -3'
miRNA:   3'- -UGCCGGCUgGaGUCG--AUGaa--------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 185003 0.66 0.891913
Target:  5'- gGCGGCCGcCCacgggacUCAGC-ACggugaCCAGCUc -3'
miRNA:   3'- -UGCCGGCuGG-------AGUCGaUGaa---GGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 49019 0.66 0.89257
Target:  5'- cGCGG-CGGCCgCGGCgucgUCCGGCg -3'
miRNA:   3'- -UGCCgGCUGGaGUCGaugaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 42851 0.66 0.89257
Target:  5'- aGCGcCCGGCCUCGGCguacGCUUUCuggaAGCc -3'
miRNA:   3'- -UGCcGGCUGGAGUCGa---UGAAGG----UCGa -5'
10829 5' -57.4 NC_002794.1 + 148642 0.67 0.816716
Target:  5'- cGCGGCggCGugCUCGGCUACgcgCCgaccgaggAGCg -3'
miRNA:   3'- -UGCCG--GCugGAGUCGAUGaa-GG--------UCGa -5'
10829 5' -57.4 NC_002794.1 + 51219 0.67 0.830122
Target:  5'- aGCGGCCGGCCggccgaugggaaaCGGUcGCUUCUAGa- -3'
miRNA:   3'- -UGCCGGCUGGa------------GUCGaUGAAGGUCga -5'
10829 5' -57.4 NC_002794.1 + 114834 0.67 0.839082
Target:  5'- gGCGGCCGAgucggcucggaggaCCUCccGCcGCU-CCAGCg -3'
miRNA:   3'- -UGCCGGCU--------------GGAGu-CGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 98977 0.67 0.833405
Target:  5'- gGCGGCgccgUGGCCUCGGUggucggcgGCUUCguCAGCUu -3'
miRNA:   3'- -UGCCG----GCUGGAGUCGa-------UGAAG--GUCGA- -5'
10829 5' -57.4 NC_002794.1 + 112336 0.67 0.841488
Target:  5'- aGCGcGCCGGCCggCGGCg----CCGGCg -3'
miRNA:   3'- -UGC-CGGCUGGa-GUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 182177 0.67 0.841488
Target:  5'- aGCGGCUguaccauaacggGGCCUCGGCg----CCGGCg -3'
miRNA:   3'- -UGCCGG------------CUGGAGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 32836 0.67 0.849386
Target:  5'- cGCGGCCGGCUcaUCGGUaGCgg-CAGCg -3'
miRNA:   3'- -UGCCGGCUGG--AGUCGaUGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 36768 0.67 0.849386
Target:  5'- gACGGCC-ACC-CAGCUGuagCCGGCc -3'
miRNA:   3'- -UGCCGGcUGGaGUCGAUgaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 148318 0.67 0.841488
Target:  5'- gACGGCCGACCgCGGUU-CgaCCuGCg -3'
miRNA:   3'- -UGCCGGCUGGaGUCGAuGaaGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 107529 0.67 0.849386
Target:  5'- gACGGCCGGCg-CGGCg----CCGGCg -3'
miRNA:   3'- -UGCCGGCUGgaGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 184598 0.67 0.816716
Target:  5'- cGCGGCCGcgggaUCGGCaACggCCAGCg -3'
miRNA:   3'- -UGCCGGCugg--AGUCGaUGaaGGUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.