miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 60140 1.08 0.003125
Target:  5'- cACGGCCGACCUCAGCUACUUCCAGCUg -3'
miRNA:   3'- -UGCCGGCUGGAGUCGAUGAAGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 119772 0.76 0.35837
Target:  5'- cGCGGCCGGCCUCcaGGCgGCU-CCGGUc -3'
miRNA:   3'- -UGCCGGCUGGAG--UCGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 146997 0.75 0.424416
Target:  5'- cCGGCCGACgUCGGCggcgGCggccgCCGGCg -3'
miRNA:   3'- uGCCGGCUGgAGUCGa---UGaa---GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 126090 0.75 0.424416
Target:  5'- uGCGGCCGACCgacug-GCUUCCGGCc -3'
miRNA:   3'- -UGCCGGCUGGagucgaUGAAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 123516 0.74 0.450992
Target:  5'- gGCuGCCGGCCUgCAGCUGgUUCgGGCa -3'
miRNA:   3'- -UGcCGGCUGGA-GUCGAUgAAGgUCGa -5'
10829 5' -57.4 NC_002794.1 + 151626 0.73 0.497213
Target:  5'- gACGGCCGGCaCUUGGCUcGCcgCCGGCc -3'
miRNA:   3'- -UGCCGGCUG-GAGUCGA-UGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 50227 0.73 0.516294
Target:  5'- aACGGCCGuCCUCGGUcACcUCCuGCa -3'
miRNA:   3'- -UGCCGGCuGGAGUCGaUGaAGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 113649 0.71 0.615165
Target:  5'- aGCGGCCcggcguCCUCGGCg---UCCAGCg -3'
miRNA:   3'- -UGCCGGcu----GGAGUCGaugaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 37937 0.71 0.635298
Target:  5'- cGCGGCCGcccguGCCUCGGCgACUcgCuCGGCg -3'
miRNA:   3'- -UGCCGGC-----UGGAGUCGaUGAa-G-GUCGa -5'
10829 5' -57.4 NC_002794.1 + 194779 0.71 0.645365
Target:  5'- aACGGCCGGCaCgcgcgCAGCgGCUcCCAGUg -3'
miRNA:   3'- -UGCCGGCUG-Ga----GUCGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 104413 0.7 0.695385
Target:  5'- cGCGGCCucGGCCUCGGCcg---CCGGCc -3'
miRNA:   3'- -UGCCGG--CUGGAGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 112567 0.7 0.705269
Target:  5'- cCGGCC-ACC-CGGCcGCUcUCCAGCUg -3'
miRNA:   3'- uGCCGGcUGGaGUCGaUGA-AGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 120855 0.7 0.705269
Target:  5'- cGCGGCCGucguccagcGCCUCGGCUGgugUCCgaacGGCg -3'
miRNA:   3'- -UGCCGGC---------UGGAGUCGAUga-AGG----UCGa -5'
10829 5' -57.4 NC_002794.1 + 123453 0.7 0.709207
Target:  5'- aGCGGCUGGCCgagCAccuguacuacgaggcGCUGCggaCCAGCg -3'
miRNA:   3'- -UGCCGGCUGGa--GU---------------CGAUGaa-GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 70236 0.69 0.715093
Target:  5'- gGCGGCCGGCCgccccgCAGCagACgcgCAGCg -3'
miRNA:   3'- -UGCCGGCUGGa-----GUCGa-UGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 114205 0.69 0.72485
Target:  5'- cACGGCCGGCgUCuccGGCgGCagCCAGCc -3'
miRNA:   3'- -UGCCGGCUGgAG---UCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 116909 0.69 0.734528
Target:  5'- gGCGGCCGGUC-CGGCgucgGCU-CCGGCg -3'
miRNA:   3'- -UGCCGGCUGGaGUCGa---UGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 184934 0.69 0.74412
Target:  5'- gGCGGUCGuCCUgccgCAGCUGCg-CCGGCc -3'
miRNA:   3'- -UGCCGGCuGGA----GUCGAUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 148979 0.69 0.74412
Target:  5'- gACGGCCGACCUCuGGgUGCUcggUCGGa- -3'
miRNA:   3'- -UGCCGGCUGGAG-UCgAUGAa--GGUCga -5'
10829 5' -57.4 NC_002794.1 + 123233 0.68 0.763012
Target:  5'- aGCGGCCuGGCCaUCAGCcugugccACUUucgCCGGCUg -3'
miRNA:   3'- -UGCCGG-CUGG-AGUCGa------UGAA---GGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.