Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 189628 | 0.68 | 0.763012 |
Target: 5'- uCGGCCGACUggcUAGCUggcugGCUgacuagCCGGCUg -3' miRNA: 3'- uGCCGGCUGGa--GUCGA-----UGAa-----GGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 156400 | 0.68 | 0.772294 |
Target: 5'- aGCGGCCGgcGCCgcggccgCGGCcACggCCGGCg -3' miRNA: 3'- -UGCCGGC--UGGa------GUCGaUGaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 194525 | 0.68 | 0.772294 |
Target: 5'- uGCcGCCGGCC-CAGCaGCgccgCCAGCa -3' miRNA: 3'- -UGcCGGCUGGaGUCGaUGaa--GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 53307 | 0.68 | 0.781454 |
Target: 5'- aGCGGUCGGCCggcgccgcgagaUCGGCUcgaaccgcACcUCCGGCg -3' miRNA: 3'- -UGCCGGCUGG------------AGUCGA--------UGaAGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 62749 | 0.68 | 0.781454 |
Target: 5'- cGCGGCCG-UCUC-GCUccgGCU-CCGGCUg -3' miRNA: 3'- -UGCCGGCuGGAGuCGA---UGAaGGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 40838 | 0.68 | 0.790485 |
Target: 5'- uGCGccuGCCGACCUC-GC-GCUcCCAGCg -3' miRNA: 3'- -UGC---CGGCUGGAGuCGaUGAaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 182966 | 0.68 | 0.790485 |
Target: 5'- gGCGGCCGGcuCCUCguucgAGCcgACggCCGGCg -3' miRNA: 3'- -UGCCGGCU--GGAG-----UCGa-UGaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 125058 | 0.68 | 0.807256 |
Target: 5'- cGCGaacccGCCGACCaUCAaguucguGCUGCUgggcUCCAGCg -3' miRNA: 3'- -UGC-----CGGCUGG-AGU-------CGAUGA----AGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 112827 | 0.68 | 0.808124 |
Target: 5'- uCGGCCG-CCgaguaCGGCUGCUcgUCGGCg -3' miRNA: 3'- uGCCGGCuGGa----GUCGAUGAa-GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 113823 | 0.68 | 0.808124 |
Target: 5'- gGCGGCgcuCGGCCUcCAGgUGCUUCUgcAGCc -3' miRNA: 3'- -UGCCG---GCUGGA-GUCgAUGAAGG--UCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 53232 | 0.68 | 0.808124 |
Target: 5'- aACGGuCCGuCCUCGGCccGCcgcgCCGGCg -3' miRNA: 3'- -UGCC-GGCuGGAGUCGa-UGaa--GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 184598 | 0.67 | 0.816716 |
Target: 5'- cGCGGCCGcgggaUCGGCaACggCCAGCg -3' miRNA: 3'- -UGCCGGCugg--AGUCGaUGaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 148642 | 0.67 | 0.816716 |
Target: 5'- cGCGGCggCGugCUCGGCUACgcgCCgaccgaggAGCg -3' miRNA: 3'- -UGCCG--GCugGAGUCGAUGaa-GG--------UCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 48071 | 0.67 | 0.816716 |
Target: 5'- gAUGGCCGGCCagcgggagCAGCcgccGCUcgCCGGCg -3' miRNA: 3'- -UGCCGGCUGGa-------GUCGa---UGAa-GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 51219 | 0.67 | 0.830122 |
Target: 5'- aGCGGCCGGCCggccgaugggaaaCGGUcGCUUCUAGa- -3' miRNA: 3'- -UGCCGGCUGGa------------GUCGaUGAAGGUCga -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 98977 | 0.67 | 0.833405 |
Target: 5'- gGCGGCgccgUGGCCUCGGUggucggcgGCUUCguCAGCUu -3' miRNA: 3'- -UGCCG----GCUGGAGUCGa-------UGAAG--GUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 114834 | 0.67 | 0.839082 |
Target: 5'- gGCGGCCGAgucggcucggaggaCCUCccGCcGCU-CCAGCg -3' miRNA: 3'- -UGCCGGCU--------------GGAGu-CGaUGAaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 112336 | 0.67 | 0.841488 |
Target: 5'- aGCGcGCCGGCCggCGGCg----CCGGCg -3' miRNA: 3'- -UGC-CGGCUGGa-GUCGaugaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 182177 | 0.67 | 0.841488 |
Target: 5'- aGCGGCUguaccauaacggGGCCUCGGCg----CCGGCg -3' miRNA: 3'- -UGCCGG------------CUGGAGUCGaugaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 148318 | 0.67 | 0.841488 |
Target: 5'- gACGGCCGACCgCGGUU-CgaCCuGCg -3' miRNA: 3'- -UGCCGGCUGGaGUCGAuGaaGGuCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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