miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 36768 0.67 0.849386
Target:  5'- gACGGCC-ACC-CAGCUGuagCCGGCc -3'
miRNA:   3'- -UGCCGGcUGGaGUCGAUgaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 32836 0.67 0.849386
Target:  5'- cGCGGCCGGCUcaUCGGUaGCgg-CAGCg -3'
miRNA:   3'- -UGCCGGCUGG--AGUCGaUGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 107529 0.67 0.849386
Target:  5'- gACGGCCGGCg-CGGCg----CCGGCg -3'
miRNA:   3'- -UGCCGGCUGgaGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 156586 0.67 0.857094
Target:  5'- gAUGGCCGACCUgGGggguuCUUCCAcGUa -3'
miRNA:   3'- -UGCCGGCUGGAgUCgau--GAAGGU-CGa -5'
10829 5' -57.4 NC_002794.1 + 96723 0.66 0.864604
Target:  5'- cCGGCCGAgC-CGGCgacgACcgCCGGCg -3'
miRNA:   3'- uGCCGGCUgGaGUCGa---UGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 137697 0.66 0.864604
Target:  5'- gGCGGaaGGCCUcCGGCUugagCCGGCa -3'
miRNA:   3'- -UGCCggCUGGA-GUCGAugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 44950 0.66 0.864604
Target:  5'- gGCGGUguCGACC-CGGgUACaUUCCAGUUc -3'
miRNA:   3'- -UGCCG--GCUGGaGUCgAUG-AAGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 115089 0.66 0.864604
Target:  5'- gGCGGCCGcCCgCAGCcGCgcgUCC-GCg -3'
miRNA:   3'- -UGCCGGCuGGaGUCGaUGa--AGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 45155 0.66 0.864604
Target:  5'- -aGGCCGACUUCcgAGaCcGCgUCCAGCa -3'
miRNA:   3'- ugCCGGCUGGAG--UC-GaUGaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 92730 0.66 0.871913
Target:  5'- uCGcGCUGGCUgcugCAGC-ACUUCCAGUc -3'
miRNA:   3'- uGC-CGGCUGGa---GUCGaUGAAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 35455 0.66 0.871913
Target:  5'- uGCGGCUGAUCgcCAGCUGCcUCUAcCUg -3'
miRNA:   3'- -UGCCGGCUGGa-GUCGAUGaAGGUcGA- -5'
10829 5' -57.4 NC_002794.1 + 100242 0.66 0.871913
Target:  5'- -aGGUCGGCgUCAGCccgcugacccGCUUCCuGCUg -3'
miRNA:   3'- ugCCGGCUGgAGUCGa---------UGAAGGuCGA- -5'
10829 5' -57.4 NC_002794.1 + 31039 0.66 0.871913
Target:  5'- -gGGCCGACagauagggCAGCggcacgGCggCCAGCUc -3'
miRNA:   3'- ugCCGGCUGga------GUCGa-----UGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 101496 0.66 0.879013
Target:  5'- gGCGGCCGGuCCgagCGGUgcgGCacacgCCGGCg -3'
miRNA:   3'- -UGCCGGCU-GGa--GUCGa--UGaa---GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 99827 0.66 0.879013
Target:  5'- uCGGCCGACCU--GCU-CUUCCAc-- -3'
miRNA:   3'- uGCCGGCUGGAguCGAuGAAGGUcga -5'
10829 5' -57.4 NC_002794.1 + 143574 0.66 0.879013
Target:  5'- uGCGcGCCGuCCUCGGCggcGCUguggucgaacaCCGGCa -3'
miRNA:   3'- -UGC-CGGCuGGAGUCGa--UGAa----------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 62057 0.66 0.879013
Target:  5'- gUGGCCGACgC-CGGCgGCgacgCCGGCg -3'
miRNA:   3'- uGCCGGCUG-GaGUCGaUGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 83545 0.66 0.879013
Target:  5'- uCGGCCaGACCgUCAGUcugGCcgUCCGGUa -3'
miRNA:   3'- uGCCGG-CUGG-AGUCGa--UGa-AGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 142131 0.66 0.8859
Target:  5'- gGCGGCCGACCgccgggucaCGGCggagGCggcgguagcaCCGGCa -3'
miRNA:   3'- -UGCCGGCUGGa--------GUCGa---UGaa--------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 60348 0.66 0.8859
Target:  5'- cGCGaCCG-CCUCGGCUACaa-CAGCc -3'
miRNA:   3'- -UGCcGGCuGGAGUCGAUGaagGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.