miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 31039 0.66 0.871913
Target:  5'- -gGGCCGACagauagggCAGCggcacgGCggCCAGCUc -3'
miRNA:   3'- ugCCGGCUGga------GUCGa-----UGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 100242 0.66 0.871913
Target:  5'- -aGGUCGGCgUCAGCccgcugacccGCUUCCuGCUg -3'
miRNA:   3'- ugCCGGCUGgAGUCGa---------UGAAGGuCGA- -5'
10829 5' -57.4 NC_002794.1 + 92730 0.66 0.871913
Target:  5'- uCGcGCUGGCUgcugCAGC-ACUUCCAGUc -3'
miRNA:   3'- uGC-CGGCUGGa---GUCGaUGAAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 35455 0.66 0.871913
Target:  5'- uGCGGCUGAUCgcCAGCUGCcUCUAcCUg -3'
miRNA:   3'- -UGCCGGCUGGa-GUCGAUGaAGGUcGA- -5'
10829 5' -57.4 NC_002794.1 + 45155 0.66 0.864604
Target:  5'- -aGGCCGACUUCcgAGaCcGCgUCCAGCa -3'
miRNA:   3'- ugCCGGCUGGAG--UC-GaUGaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 115089 0.66 0.864604
Target:  5'- gGCGGCCGcCCgCAGCcGCgcgUCC-GCg -3'
miRNA:   3'- -UGCCGGCuGGaGUCGaUGa--AGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 44950 0.66 0.864604
Target:  5'- gGCGGUguCGACC-CGGgUACaUUCCAGUUc -3'
miRNA:   3'- -UGCCG--GCUGGaGUCgAUG-AAGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 137697 0.66 0.864604
Target:  5'- gGCGGaaGGCCUcCGGCUugagCCGGCa -3'
miRNA:   3'- -UGCCggCUGGA-GUCGAugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 96723 0.66 0.864604
Target:  5'- cCGGCCGAgC-CGGCgacgACcgCCGGCg -3'
miRNA:   3'- uGCCGGCUgGaGUCGa---UGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 156586 0.67 0.857094
Target:  5'- gAUGGCCGACCUgGGggguuCUUCCAcGUa -3'
miRNA:   3'- -UGCCGGCUGGAgUCgau--GAAGGU-CGa -5'
10829 5' -57.4 NC_002794.1 + 107529 0.67 0.849386
Target:  5'- gACGGCCGGCg-CGGCg----CCGGCg -3'
miRNA:   3'- -UGCCGGCUGgaGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 36768 0.67 0.849386
Target:  5'- gACGGCC-ACC-CAGCUGuagCCGGCc -3'
miRNA:   3'- -UGCCGGcUGGaGUCGAUgaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 32836 0.67 0.849386
Target:  5'- cGCGGCCGGCUcaUCGGUaGCgg-CAGCg -3'
miRNA:   3'- -UGCCGGCUGG--AGUCGaUGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 112336 0.67 0.841488
Target:  5'- aGCGcGCCGGCCggCGGCg----CCGGCg -3'
miRNA:   3'- -UGC-CGGCUGGa-GUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 182177 0.67 0.841488
Target:  5'- aGCGGCUguaccauaacggGGCCUCGGCg----CCGGCg -3'
miRNA:   3'- -UGCCGG------------CUGGAGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 148318 0.67 0.841488
Target:  5'- gACGGCCGACCgCGGUU-CgaCCuGCg -3'
miRNA:   3'- -UGCCGGCUGGaGUCGAuGaaGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 114834 0.67 0.839082
Target:  5'- gGCGGCCGAgucggcucggaggaCCUCccGCcGCU-CCAGCg -3'
miRNA:   3'- -UGCCGGCU--------------GGAGu-CGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 98977 0.67 0.833405
Target:  5'- gGCGGCgccgUGGCCUCGGUggucggcgGCUUCguCAGCUu -3'
miRNA:   3'- -UGCCG----GCUGGAGUCGa-------UGAAG--GUCGA- -5'
10829 5' -57.4 NC_002794.1 + 51219 0.67 0.830122
Target:  5'- aGCGGCCGGCCggccgaugggaaaCGGUcGCUUCUAGa- -3'
miRNA:   3'- -UGCCGGCUGGa------------GUCGaUGAAGGUCga -5'
10829 5' -57.4 NC_002794.1 + 184598 0.67 0.816716
Target:  5'- cGCGGCCGcgggaUCGGCaACggCCAGCg -3'
miRNA:   3'- -UGCCGGCugg--AGUCGaUGaaGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.