miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 184598 0.67 0.816716
Target:  5'- cGCGGCCGcgggaUCGGCaACggCCAGCg -3'
miRNA:   3'- -UGCCGGCugg--AGUCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 148642 0.67 0.816716
Target:  5'- cGCGGCggCGugCUCGGCUACgcgCCgaccgaggAGCg -3'
miRNA:   3'- -UGCCG--GCugGAGUCGAUGaa-GG--------UCGa -5'
10829 5' -57.4 NC_002794.1 + 112827 0.68 0.808124
Target:  5'- uCGGCCG-CCgaguaCGGCUGCUcgUCGGCg -3'
miRNA:   3'- uGCCGGCuGGa----GUCGAUGAa-GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 113823 0.68 0.808124
Target:  5'- gGCGGCgcuCGGCCUcCAGgUGCUUCUgcAGCc -3'
miRNA:   3'- -UGCCG---GCUGGA-GUCgAUGAAGG--UCGa -5'
10829 5' -57.4 NC_002794.1 + 53232 0.68 0.808124
Target:  5'- aACGGuCCGuCCUCGGCccGCcgcgCCGGCg -3'
miRNA:   3'- -UGCC-GGCuGGAGUCGa-UGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 125058 0.68 0.807256
Target:  5'- cGCGaacccGCCGACCaUCAaguucguGCUGCUgggcUCCAGCg -3'
miRNA:   3'- -UGC-----CGGCUGG-AGU-------CGAUGA----AGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 40838 0.68 0.790485
Target:  5'- uGCGccuGCCGACCUC-GC-GCUcCCAGCg -3'
miRNA:   3'- -UGC---CGGCUGGAGuCGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 182966 0.68 0.790485
Target:  5'- gGCGGCCGGcuCCUCguucgAGCcgACggCCGGCg -3'
miRNA:   3'- -UGCCGGCU--GGAG-----UCGa-UGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 53307 0.68 0.781454
Target:  5'- aGCGGUCGGCCggcgccgcgagaUCGGCUcgaaccgcACcUCCGGCg -3'
miRNA:   3'- -UGCCGGCUGG------------AGUCGA--------UGaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 62749 0.68 0.781454
Target:  5'- cGCGGCCG-UCUC-GCUccgGCU-CCGGCUg -3'
miRNA:   3'- -UGCCGGCuGGAGuCGA---UGAaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 156400 0.68 0.772294
Target:  5'- aGCGGCCGgcGCCgcggccgCGGCcACggCCGGCg -3'
miRNA:   3'- -UGCCGGC--UGGa------GUCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 194525 0.68 0.772294
Target:  5'- uGCcGCCGGCC-CAGCaGCgccgCCAGCa -3'
miRNA:   3'- -UGcCGGCUGGaGUCGaUGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 123233 0.68 0.763012
Target:  5'- aGCGGCCuGGCCaUCAGCcugugccACUUucgCCGGCUg -3'
miRNA:   3'- -UGCCGG-CUGG-AGUCGa------UGAA---GGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 189628 0.68 0.763012
Target:  5'- uCGGCCGACUggcUAGCUggcugGCUgacuagCCGGCUg -3'
miRNA:   3'- uGCCGGCUGGa--GUCGA-----UGAa-----GGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 148979 0.69 0.74412
Target:  5'- gACGGCCGACCUCuGGgUGCUcggUCGGa- -3'
miRNA:   3'- -UGCCGGCUGGAG-UCgAUGAa--GGUCga -5'
10829 5' -57.4 NC_002794.1 + 184934 0.69 0.74412
Target:  5'- gGCGGUCGuCCUgccgCAGCUGCg-CCGGCc -3'
miRNA:   3'- -UGCCGGCuGGA----GUCGAUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 116909 0.69 0.734528
Target:  5'- gGCGGCCGGUC-CGGCgucgGCU-CCGGCg -3'
miRNA:   3'- -UGCCGGCUGGaGUCGa---UGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 114205 0.69 0.72485
Target:  5'- cACGGCCGGCgUCuccGGCgGCagCCAGCc -3'
miRNA:   3'- -UGCCGGCUGgAG---UCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 70236 0.69 0.715093
Target:  5'- gGCGGCCGGCCgccccgCAGCagACgcgCAGCg -3'
miRNA:   3'- -UGCCGGCUGGa-----GUCGa-UGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 123453 0.7 0.709207
Target:  5'- aGCGGCUGGCCgagCAccuguacuacgaggcGCUGCggaCCAGCg -3'
miRNA:   3'- -UGCCGGCUGGa--GU---------------CGAUGaa-GGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.