miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 9017 0.66 0.899019
Target:  5'- gACGuGCaGACCaaCAGCUGCaaCCGGCUg -3'
miRNA:   3'- -UGC-CGgCUGGa-GUCGAUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 31039 0.66 0.871913
Target:  5'- -gGGCCGACagauagggCAGCggcacgGCggCCAGCUc -3'
miRNA:   3'- ugCCGGCUGga------GUCGa-----UGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 32836 0.67 0.849386
Target:  5'- cGCGGCCGGCUcaUCGGUaGCgg-CAGCg -3'
miRNA:   3'- -UGCCGGCUGG--AGUCGaUGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 35455 0.66 0.871913
Target:  5'- uGCGGCUGAUCgcCAGCUGCcUCUAcCUg -3'
miRNA:   3'- -UGCCGGCUGGa-GUCGAUGaAGGUcGA- -5'
10829 5' -57.4 NC_002794.1 + 36768 0.67 0.849386
Target:  5'- gACGGCC-ACC-CAGCUGuagCCGGCc -3'
miRNA:   3'- -UGCCGGcUGGaGUCGAUgaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 37937 0.71 0.635298
Target:  5'- cGCGGCCGcccguGCCUCGGCgACUcgCuCGGCg -3'
miRNA:   3'- -UGCCGGC-----UGGAGUCGaUGAa-G-GUCGa -5'
10829 5' -57.4 NC_002794.1 + 40838 0.68 0.790485
Target:  5'- uGCGccuGCCGACCUC-GC-GCUcCCAGCg -3'
miRNA:   3'- -UGC---CGGCUGGAGuCGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 42651 0.66 0.899019
Target:  5'- cGCGGCCGaaGCCgaCGGC-GCcgCCGGCa -3'
miRNA:   3'- -UGCCGGC--UGGa-GUCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 42851 0.66 0.89257
Target:  5'- aGCGcCCGGCCUCGGCguacGCUUUCuggaAGCc -3'
miRNA:   3'- -UGCcGGCUGGAGUCGa---UGAAGG----UCGa -5'
10829 5' -57.4 NC_002794.1 + 44950 0.66 0.864604
Target:  5'- gGCGGUguCGACC-CGGgUACaUUCCAGUUc -3'
miRNA:   3'- -UGCCG--GCUGGaGUCgAUG-AAGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 45155 0.66 0.864604
Target:  5'- -aGGCCGACUUCcgAGaCcGCgUCCAGCa -3'
miRNA:   3'- ugCCGGCUGGAG--UC-GaUGaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 48071 0.67 0.816716
Target:  5'- gAUGGCCGGCCagcgggagCAGCcgccGCUcgCCGGCg -3'
miRNA:   3'- -UGCCGGCUGGa-------GUCGa---UGAa-GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 49019 0.66 0.89257
Target:  5'- cGCGG-CGGCCgCGGCgucgUCCGGCg -3'
miRNA:   3'- -UGCCgGCUGGaGUCGaugaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 50227 0.73 0.516294
Target:  5'- aACGGCCGuCCUCGGUcACcUCCuGCa -3'
miRNA:   3'- -UGCCGGCuGGAGUCGaUGaAGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 51219 0.67 0.830122
Target:  5'- aGCGGCCGGCCggccgaugggaaaCGGUcGCUUCUAGa- -3'
miRNA:   3'- -UGCCGGCUGGa------------GUCGaUGAAGGUCga -5'
10829 5' -57.4 NC_002794.1 + 53232 0.68 0.808124
Target:  5'- aACGGuCCGuCCUCGGCccGCcgcgCCGGCg -3'
miRNA:   3'- -UGCC-GGCuGGAGUCGa-UGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 53307 0.68 0.781454
Target:  5'- aGCGGUCGGCCggcgccgcgagaUCGGCUcgaaccgcACcUCCGGCg -3'
miRNA:   3'- -UGCCGGCUGG------------AGUCGA--------UGaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 59980 0.66 0.899019
Target:  5'- -aGGUCGACCgcuGGCUGCg-CCAGUUc -3'
miRNA:   3'- ugCCGGCUGGag-UCGAUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 60140 1.08 0.003125
Target:  5'- cACGGCCGACCUCAGCUACUUCCAGCUg -3'
miRNA:   3'- -UGCCGGCUGGAGUCGAUGAAGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 60348 0.66 0.8859
Target:  5'- cGCGaCCG-CCUCGGCUACaa-CAGCc -3'
miRNA:   3'- -UGCcGGCuGGAGUCGAUGaagGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.