miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 62057 0.66 0.879013
Target:  5'- gUGGCCGACgC-CGGCgGCgacgCCGGCg -3'
miRNA:   3'- uGCCGGCUG-GaGUCGaUGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 62749 0.68 0.781454
Target:  5'- cGCGGCCG-UCUC-GCUccgGCU-CCGGCUg -3'
miRNA:   3'- -UGCCGGCuGGAGuCGA---UGAaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 68491 0.66 0.8859
Target:  5'- gGCGGCCGAgC-CGGCcgUGCgggugaucugCCAGCg -3'
miRNA:   3'- -UGCCGGCUgGaGUCG--AUGaa--------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 68548 0.66 0.89257
Target:  5'- cGCGGCCGACa--AGCUGCgggugUCgccgaCGGCg -3'
miRNA:   3'- -UGCCGGCUGgagUCGAUGa----AG-----GUCGa -5'
10829 5' -57.4 NC_002794.1 + 70236 0.69 0.715093
Target:  5'- gGCGGCCGGCCgccccgCAGCagACgcgCAGCg -3'
miRNA:   3'- -UGCCGGCUGGa-----GUCGa-UGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 75287 0.66 0.899019
Target:  5'- cCGGCCGGCC--GGCgcCUcgCCAGCc -3'
miRNA:   3'- uGCCGGCUGGagUCGauGAa-GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 76845 0.66 0.8859
Target:  5'- uGCGcGCCGGCCUCGuCgGC--CCAGCUa -3'
miRNA:   3'- -UGC-CGGCUGGAGUcGaUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 83545 0.66 0.879013
Target:  5'- uCGGCCaGACCgUCAGUcugGCcgUCCGGUa -3'
miRNA:   3'- uGCCGG-CUGG-AGUCGa--UGa-AGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 92730 0.66 0.871913
Target:  5'- uCGcGCUGGCUgcugCAGC-ACUUCCAGUc -3'
miRNA:   3'- uGC-CGGCUGGa---GUCGaUGAAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 96723 0.66 0.864604
Target:  5'- cCGGCCGAgC-CGGCgacgACcgCCGGCg -3'
miRNA:   3'- uGCCGGCUgGaGUCGa---UGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 98977 0.67 0.833405
Target:  5'- gGCGGCgccgUGGCCUCGGUggucggcgGCUUCguCAGCUu -3'
miRNA:   3'- -UGCCG----GCUGGAGUCGa-------UGAAG--GUCGA- -5'
10829 5' -57.4 NC_002794.1 + 99827 0.66 0.879013
Target:  5'- uCGGCCGACCU--GCU-CUUCCAc-- -3'
miRNA:   3'- uGCCGGCUGGAguCGAuGAAGGUcga -5'
10829 5' -57.4 NC_002794.1 + 100242 0.66 0.871913
Target:  5'- -aGGUCGGCgUCAGCccgcugacccGCUUCCuGCUg -3'
miRNA:   3'- ugCCGGCUGgAGUCGa---------UGAAGGuCGA- -5'
10829 5' -57.4 NC_002794.1 + 101496 0.66 0.879013
Target:  5'- gGCGGCCGGuCCgagCGGUgcgGCacacgCCGGCg -3'
miRNA:   3'- -UGCCGGCU-GGa--GUCGa--UGaa---GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 104413 0.7 0.695385
Target:  5'- cGCGGCCucGGCCUCGGCcg---CCGGCc -3'
miRNA:   3'- -UGCCGG--CUGGAGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 107529 0.67 0.849386
Target:  5'- gACGGCCGGCg-CGGCg----CCGGCg -3'
miRNA:   3'- -UGCCGGCUGgaGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 112336 0.67 0.841488
Target:  5'- aGCGcGCCGGCCggCGGCg----CCGGCg -3'
miRNA:   3'- -UGC-CGGCUGGa-GUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 112567 0.7 0.705269
Target:  5'- cCGGCC-ACC-CGGCcGCUcUCCAGCUg -3'
miRNA:   3'- uGCCGGcUGGaGUCGaUGA-AGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 112827 0.68 0.808124
Target:  5'- uCGGCCG-CCgaguaCGGCUGCUcgUCGGCg -3'
miRNA:   3'- uGCCGGCuGGa----GUCGAUGAa-GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 113649 0.71 0.615165
Target:  5'- aGCGGCCcggcguCCUCGGCg---UCCAGCg -3'
miRNA:   3'- -UGCCGGcu----GGAGUCGaugaAGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.