miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 113823 0.68 0.808124
Target:  5'- gGCGGCgcuCGGCCUcCAGgUGCUUCUgcAGCc -3'
miRNA:   3'- -UGCCG---GCUGGA-GUCgAUGAAGG--UCGa -5'
10829 5' -57.4 NC_002794.1 + 114205 0.69 0.72485
Target:  5'- cACGGCCGGCgUCuccGGCgGCagCCAGCc -3'
miRNA:   3'- -UGCCGGCUGgAG---UCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 114834 0.67 0.839082
Target:  5'- gGCGGCCGAgucggcucggaggaCCUCccGCcGCU-CCAGCg -3'
miRNA:   3'- -UGCCGGCU--------------GGAGu-CGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 115089 0.66 0.864604
Target:  5'- gGCGGCCGcCCgCAGCcGCgcgUCC-GCg -3'
miRNA:   3'- -UGCCGGCuGGaGUCGaUGa--AGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 116909 0.69 0.734528
Target:  5'- gGCGGCCGGUC-CGGCgucgGCU-CCGGCg -3'
miRNA:   3'- -UGCCGGCUGGaGUCGa---UGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 119631 0.66 0.899019
Target:  5'- uCGGCCGuCgUCAGCacgGCUUCgucgguCAGCg -3'
miRNA:   3'- uGCCGGCuGgAGUCGa--UGAAG------GUCGa -5'
10829 5' -57.4 NC_002794.1 + 119772 0.76 0.35837
Target:  5'- cGCGGCCGGCCUCcaGGCgGCU-CCGGUc -3'
miRNA:   3'- -UGCCGGCUGGAG--UCGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 120855 0.7 0.705269
Target:  5'- cGCGGCCGucguccagcGCCUCGGCUGgugUCCgaacGGCg -3'
miRNA:   3'- -UGCCGGC---------UGGAGUCGAUga-AGG----UCGa -5'
10829 5' -57.4 NC_002794.1 + 123233 0.68 0.763012
Target:  5'- aGCGGCCuGGCCaUCAGCcugugccACUUucgCCGGCUg -3'
miRNA:   3'- -UGCCGG-CUGG-AGUCGa------UGAA---GGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 123453 0.7 0.709207
Target:  5'- aGCGGCUGGCCgagCAccuguacuacgaggcGCUGCggaCCAGCg -3'
miRNA:   3'- -UGCCGGCUGGa--GU---------------CGAUGaa-GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 123516 0.74 0.450992
Target:  5'- gGCuGCCGGCCUgCAGCUGgUUCgGGCa -3'
miRNA:   3'- -UGcCGGCUGGA-GUCGAUgAAGgUCGa -5'
10829 5' -57.4 NC_002794.1 + 125058 0.68 0.807256
Target:  5'- cGCGaacccGCCGACCaUCAaguucguGCUGCUgggcUCCAGCg -3'
miRNA:   3'- -UGC-----CGGCUGG-AGU-------CGAUGA----AGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 126090 0.75 0.424416
Target:  5'- uGCGGCCGACCgacug-GCUUCCGGCc -3'
miRNA:   3'- -UGCCGGCUGGagucgaUGAAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 127195 0.66 0.89257
Target:  5'- cGCGGCCGcaGCCgcagCAGCaGCcucaaccCCAGCa -3'
miRNA:   3'- -UGCCGGC--UGGa---GUCGaUGaa-----GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 137697 0.66 0.864604
Target:  5'- gGCGGaaGGCCUcCGGCUugagCCGGCa -3'
miRNA:   3'- -UGCCggCUGGA-GUCGAugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 142131 0.66 0.8859
Target:  5'- gGCGGCCGACCgccgggucaCGGCggagGCggcgguagcaCCGGCa -3'
miRNA:   3'- -UGCCGGCUGGa--------GUCGa---UGaa--------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 143574 0.66 0.879013
Target:  5'- uGCGcGCCGuCCUCGGCggcGCUguggucgaacaCCGGCa -3'
miRNA:   3'- -UGC-CGGCuGGAGUCGa--UGAa----------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 146997 0.75 0.424416
Target:  5'- cCGGCCGACgUCGGCggcgGCggccgCCGGCg -3'
miRNA:   3'- uGCCGGCUGgAGUCGa---UGaa---GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 148318 0.67 0.841488
Target:  5'- gACGGCCGACCgCGGUU-CgaCCuGCg -3'
miRNA:   3'- -UGCCGGCUGGaGUCGAuGaaGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 148642 0.67 0.816716
Target:  5'- cGCGGCggCGugCUCGGCUACgcgCCgaccgaggAGCg -3'
miRNA:   3'- -UGCCG--GCugGAGUCGAUGaa-GG--------UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.