miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 194779 0.71 0.645365
Target:  5'- aACGGCCGGCaCgcgcgCAGCgGCUcCCAGUg -3'
miRNA:   3'- -UGCCGGCUG-Ga----GUCGaUGAaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 194525 0.68 0.772294
Target:  5'- uGCcGCCGGCC-CAGCaGCgccgCCAGCa -3'
miRNA:   3'- -UGcCGGCUGGaGUCGaUGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 192010 0.66 0.899019
Target:  5'- aGCGGCggUGGCCgCGGCUGCUguuUCUguGGCg -3'
miRNA:   3'- -UGCCG--GCUGGaGUCGAUGA---AGG--UCGa -5'
10829 5' -57.4 NC_002794.1 + 189628 0.68 0.763012
Target:  5'- uCGGCCGACUggcUAGCUggcugGCUgacuagCCGGCUg -3'
miRNA:   3'- uGCCGGCUGGa--GUCGA-----UGAa-----GGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 185003 0.66 0.891913
Target:  5'- gGCGGCCGcCCacgggacUCAGC-ACggugaCCAGCUc -3'
miRNA:   3'- -UGCCGGCuGG-------AGUCGaUGaa---GGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 184934 0.69 0.74412
Target:  5'- gGCGGUCGuCCUgccgCAGCUGCg-CCGGCc -3'
miRNA:   3'- -UGCCGGCuGGA----GUCGAUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 184598 0.67 0.816716
Target:  5'- cGCGGCCGcgggaUCGGCaACggCCAGCg -3'
miRNA:   3'- -UGCCGGCugg--AGUCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 182966 0.68 0.790485
Target:  5'- gGCGGCCGGcuCCUCguucgAGCcgACggCCGGCg -3'
miRNA:   3'- -UGCCGGCU--GGAG-----UCGa-UGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 182177 0.67 0.841488
Target:  5'- aGCGGCUguaccauaacggGGCCUCGGCg----CCGGCg -3'
miRNA:   3'- -UGCCGG------------CUGGAGUCGaugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 156586 0.67 0.857094
Target:  5'- gAUGGCCGACCUgGGggguuCUUCCAcGUa -3'
miRNA:   3'- -UGCCGGCUGGAgUCgau--GAAGGU-CGa -5'
10829 5' -57.4 NC_002794.1 + 156400 0.68 0.772294
Target:  5'- aGCGGCCGgcGCCgcggccgCGGCcACggCCGGCg -3'
miRNA:   3'- -UGCCGGC--UGGa------GUCGaUGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 151626 0.73 0.497213
Target:  5'- gACGGCCGGCaCUUGGCUcGCcgCCGGCc -3'
miRNA:   3'- -UGCCGGCUG-GAGUCGA-UGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 148979 0.69 0.74412
Target:  5'- gACGGCCGACCUCuGGgUGCUcggUCGGa- -3'
miRNA:   3'- -UGCCGGCUGGAG-UCgAUGAa--GGUCga -5'
10829 5' -57.4 NC_002794.1 + 148642 0.67 0.816716
Target:  5'- cGCGGCggCGugCUCGGCUACgcgCCgaccgaggAGCg -3'
miRNA:   3'- -UGCCG--GCugGAGUCGAUGaa-GG--------UCGa -5'
10829 5' -57.4 NC_002794.1 + 148318 0.67 0.841488
Target:  5'- gACGGCCGACCgCGGUU-CgaCCuGCg -3'
miRNA:   3'- -UGCCGGCUGGaGUCGAuGaaGGuCGa -5'
10829 5' -57.4 NC_002794.1 + 146997 0.75 0.424416
Target:  5'- cCGGCCGACgUCGGCggcgGCggccgCCGGCg -3'
miRNA:   3'- uGCCGGCUGgAGUCGa---UGaa---GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 143574 0.66 0.879013
Target:  5'- uGCGcGCCGuCCUCGGCggcGCUguggucgaacaCCGGCa -3'
miRNA:   3'- -UGC-CGGCuGGAGUCGa--UGAa----------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 142131 0.66 0.8859
Target:  5'- gGCGGCCGACCgccgggucaCGGCggagGCggcgguagcaCCGGCa -3'
miRNA:   3'- -UGCCGGCUGGa--------GUCGa---UGaa--------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 137697 0.66 0.864604
Target:  5'- gGCGGaaGGCCUcCGGCUugagCCGGCa -3'
miRNA:   3'- -UGCCggCUGGA-GUCGAugaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 127195 0.66 0.89257
Target:  5'- cGCGGCCGcaGCCgcagCAGCaGCcucaaccCCAGCa -3'
miRNA:   3'- -UGCCGGC--UGGa---GUCGaUGaa-----GGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.