Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 126090 | 0.75 | 0.424416 |
Target: 5'- uGCGGCCGACCgacug-GCUUCCGGCc -3' miRNA: 3'- -UGCCGGCUGGagucgaUGAAGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 125058 | 0.68 | 0.807256 |
Target: 5'- cGCGaacccGCCGACCaUCAaguucguGCUGCUgggcUCCAGCg -3' miRNA: 3'- -UGC-----CGGCUGG-AGU-------CGAUGA----AGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 123516 | 0.74 | 0.450992 |
Target: 5'- gGCuGCCGGCCUgCAGCUGgUUCgGGCa -3' miRNA: 3'- -UGcCGGCUGGA-GUCGAUgAAGgUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 123453 | 0.7 | 0.709207 |
Target: 5'- aGCGGCUGGCCgagCAccuguacuacgaggcGCUGCggaCCAGCg -3' miRNA: 3'- -UGCCGGCUGGa--GU---------------CGAUGaa-GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 123233 | 0.68 | 0.763012 |
Target: 5'- aGCGGCCuGGCCaUCAGCcugugccACUUucgCCGGCUg -3' miRNA: 3'- -UGCCGG-CUGG-AGUCGa------UGAA---GGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 120855 | 0.7 | 0.705269 |
Target: 5'- cGCGGCCGucguccagcGCCUCGGCUGgugUCCgaacGGCg -3' miRNA: 3'- -UGCCGGC---------UGGAGUCGAUga-AGG----UCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 119772 | 0.76 | 0.35837 |
Target: 5'- cGCGGCCGGCCUCcaGGCgGCU-CCGGUc -3' miRNA: 3'- -UGCCGGCUGGAG--UCGaUGAaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 119631 | 0.66 | 0.899019 |
Target: 5'- uCGGCCGuCgUCAGCacgGCUUCgucgguCAGCg -3' miRNA: 3'- uGCCGGCuGgAGUCGa--UGAAG------GUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 116909 | 0.69 | 0.734528 |
Target: 5'- gGCGGCCGGUC-CGGCgucgGCU-CCGGCg -3' miRNA: 3'- -UGCCGGCUGGaGUCGa---UGAaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 115089 | 0.66 | 0.864604 |
Target: 5'- gGCGGCCGcCCgCAGCcGCgcgUCC-GCg -3' miRNA: 3'- -UGCCGGCuGGaGUCGaUGa--AGGuCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 114834 | 0.67 | 0.839082 |
Target: 5'- gGCGGCCGAgucggcucggaggaCCUCccGCcGCU-CCAGCg -3' miRNA: 3'- -UGCCGGCU--------------GGAGu-CGaUGAaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 114205 | 0.69 | 0.72485 |
Target: 5'- cACGGCCGGCgUCuccGGCgGCagCCAGCc -3' miRNA: 3'- -UGCCGGCUGgAG---UCGaUGaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 113823 | 0.68 | 0.808124 |
Target: 5'- gGCGGCgcuCGGCCUcCAGgUGCUUCUgcAGCc -3' miRNA: 3'- -UGCCG---GCUGGA-GUCgAUGAAGG--UCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 113649 | 0.71 | 0.615165 |
Target: 5'- aGCGGCCcggcguCCUCGGCg---UCCAGCg -3' miRNA: 3'- -UGCCGGcu----GGAGUCGaugaAGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 112827 | 0.68 | 0.808124 |
Target: 5'- uCGGCCG-CCgaguaCGGCUGCUcgUCGGCg -3' miRNA: 3'- uGCCGGCuGGa----GUCGAUGAa-GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 112567 | 0.7 | 0.705269 |
Target: 5'- cCGGCC-ACC-CGGCcGCUcUCCAGCUg -3' miRNA: 3'- uGCCGGcUGGaGUCGaUGA-AGGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 112336 | 0.67 | 0.841488 |
Target: 5'- aGCGcGCCGGCCggCGGCg----CCGGCg -3' miRNA: 3'- -UGC-CGGCUGGa-GUCGaugaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 107529 | 0.67 | 0.849386 |
Target: 5'- gACGGCCGGCg-CGGCg----CCGGCg -3' miRNA: 3'- -UGCCGGCUGgaGUCGaugaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 104413 | 0.7 | 0.695385 |
Target: 5'- cGCGGCCucGGCCUCGGCcg---CCGGCc -3' miRNA: 3'- -UGCCGG--CUGGAGUCGaugaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 101496 | 0.66 | 0.879013 |
Target: 5'- gGCGGCCGGuCCgagCGGUgcgGCacacgCCGGCg -3' miRNA: 3'- -UGCCGGCU-GGa--GUCGa--UGaa---GGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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